Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28152 | 3' | -64.5 | NC_005887.1 | + | 11706 | 0.66 | 0.249217 |
Target: 5'- gCGUCUGCAacgCGUCGaGCuCGGCAuUGCGc -3' miRNA: 3'- -GCGGGCGUa--GCGGC-CG-GCCGUcACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2779 | 0.66 | 0.249217 |
Target: 5'- aGUCCGuCGUCGCgCGGCuCGGCcgcuUGCc -3' miRNA: 3'- gCGGGC-GUAGCG-GCCG-GCCGuc--ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 26568 | 0.66 | 0.243113 |
Target: 5'- gCGCUCGaggaaAUCGUcgaggaagCGGCCGGCAugcccGUGCu -3' miRNA: 3'- -GCGGGCg----UAGCG--------GCCGGCCGU-----CACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 16473 | 0.66 | 0.243113 |
Target: 5'- uCGgCCGCGUgagcuuCCGGCCGGCGGccgucucgacUGCa -3' miRNA: 3'- -GCgGGCGUAgc----GGCCGGCCGUC----------ACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 5581 | 0.66 | 0.243113 |
Target: 5'- uGCCUGCugcgGCCGGUgcugCGGCcGGUGCu -3' miRNA: 3'- gCGGGCGuag-CGGCCG----GCCG-UCACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 28478 | 0.66 | 0.243113 |
Target: 5'- gCGCCUGCGcgCGCuCGGCU-GCGacGUGCGc -3' miRNA: 3'- -GCGGGCGUa-GCG-GCCGGcCGU--CACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 29566 | 0.66 | 0.249217 |
Target: 5'- gCGCCCGcCGUCgagGCC-GCCGGCuacgacaucGUGCu -3' miRNA: 3'- -GCGGGC-GUAG---CGGcCGGCCGu--------CACGc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 13524 | 0.67 | 0.203292 |
Target: 5'- gCGCCUGCG-CGCCcgucaggaugaacGuGCUGaGCGGUGCGc -3' miRNA: 3'- -GCGGGCGUaGCGG-------------C-CGGC-CGUCACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 29417 | 0.67 | 0.214443 |
Target: 5'- gGCUCGaCAgcUCGUCGGCCGaGUAGUcgucgGCGu -3' miRNA: 3'- gCGGGC-GU--AGCGGCCGGC-CGUCA-----CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 2180 | 0.67 | 0.214443 |
Target: 5'- gGCCUGa--CGCCGGCCG-CGGUGa- -3' miRNA: 3'- gCGGGCguaGCGGCCGGCcGUCACgc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 3390 | 0.67 | 0.209068 |
Target: 5'- gCGCaCGCuguUCGCCGcgcgcuaccGCUGGCAGgGCGg -3' miRNA: 3'- -GCGgGCGu--AGCGGC---------CGGCCGUCaCGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 14975 | 0.67 | 0.203811 |
Target: 5'- aCGCCuaCGCcgCGCaGGCCGcGCAGgccgcagGCGu -3' miRNA: 3'- -GCGG--GCGuaGCGgCCGGC-CGUCa------CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 8543 | 0.67 | 0.193639 |
Target: 5'- aGCCaCGUGUCGUC-GCCGaGCGGuUGCGc -3' miRNA: 3'- gCGG-GCGUAGCGGcCGGC-CGUC-ACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 18109 | 0.67 | 0.193639 |
Target: 5'- uCGCCCa-AUCGUCGGCCGuCAGUccgGCGc -3' miRNA: 3'- -GCGGGcgUAGCGGCCGGCcGUCA---CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 983 | 0.67 | 0.188722 |
Target: 5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3' miRNA: 3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 12708 | 0.67 | 0.193639 |
Target: 5'- aCGCgCGCA-CGCUGGUCGcGCAGcagcagaaUGCGc -3' miRNA: 3'- -GCGgGCGUaGCGGCCGGC-CGUC--------ACGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 23442 | 0.67 | 0.193639 |
Target: 5'- cCGCCCGCcauccCGCCGcuuccaccggaaGcCCGGCAGccgGCGa -3' miRNA: 3'- -GCGGGCGua---GCGGC------------C-GGCCGUCa--CGC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 23111 | 0.67 | 0.198668 |
Target: 5'- gGCCaCGUAcgUGuuGGCUGGCGGUGa- -3' miRNA: 3'- gCGG-GCGUa-GCggCCGGCCGUCACgc -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 25668 | 0.67 | 0.198668 |
Target: 5'- cCGCagCGCGUCGCCaucGUCGGuCAGUGgGu -3' miRNA: 3'- -GCGg-GCGUAGCGGc--CGGCC-GUCACgC- -5' |
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28152 | 3' | -64.5 | NC_005887.1 | + | 23389 | 0.67 | 0.209068 |
Target: 5'- uGCUCGCGcUGCC-GCUGGCAGccUGCa -3' miRNA: 3'- gCGGGCGUaGCGGcCGGCCGUC--ACGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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