miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28152 3' -64.5 NC_005887.1 + 12659 0.67 0.188722
Target:  5'- aCGCCgaGCGUCGCggccgGGUCGGCGGacaccaUGCGc -3'
miRNA:   3'- -GCGGg-CGUAGCGg----CCGGCCGUC------ACGC- -5'
28152 3' -64.5 NC_005887.1 + 983 0.67 0.188722
Target:  5'- uCGCCgacacgCGCaAUUGCCGGCCG-CcGUGCGc -3'
miRNA:   3'- -GCGG------GCG-UAGCGGCCGGCcGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 642 0.68 0.183915
Target:  5'- gGUUCuCAUCGCCcaucuGGCCGGCGGUcuucGCGc -3'
miRNA:   3'- gCGGGcGUAGCGG-----CCGGCCGUCA----CGC- -5'
28152 3' -64.5 NC_005887.1 + 15980 0.68 0.183915
Target:  5'- gGCCCGCGcggaaCGCaGGUCGGcCAGcUGCGc -3'
miRNA:   3'- gCGGGCGUa----GCGgCCGGCC-GUC-ACGC- -5'
28152 3' -64.5 NC_005887.1 + 40851 0.68 0.179217
Target:  5'- cCGCCaCGaaccucgacCGCCGGCuCGGCGGcGCGc -3'
miRNA:   3'- -GCGG-GCgua------GCGGCCG-GCCGUCaCGC- -5'
28152 3' -64.5 NC_005887.1 + 40691 0.68 0.174625
Target:  5'- gGCgCGCG-CGCaCGGCUGGCAGgaGCc -3'
miRNA:   3'- gCGgGCGUaGCG-GCCGGCCGUCa-CGc -5'
28152 3' -64.5 NC_005887.1 + 30522 0.68 0.174172
Target:  5'- aGCCCGCGUaggcggcCGUCGGCCGagacgccacGCAGcaGCGu -3'
miRNA:   3'- gCGGGCGUA-------GCGGCCGGC---------CGUCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 427 0.68 0.17192
Target:  5'- cCGCCCGCuGUUGCUgcgcucgaacccucuGGCgCGuGUGGUGCGg -3'
miRNA:   3'- -GCGGGCG-UAGCGG---------------CCG-GC-CGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 35425 0.68 0.167496
Target:  5'- gGCCCGCGUggUGCCgggcgugaagcucguGGCCGGCcGccGCGg -3'
miRNA:   3'- gCGGGCGUA--GCGG---------------CCGGCCGuCa-CGC- -5'
28152 3' -64.5 NC_005887.1 + 29044 0.68 0.161473
Target:  5'- uCGgCCGUuUCGCCGGCCGGUAc---- -3'
miRNA:   3'- -GCgGGCGuAGCGGCCGGCCGUcacgc -5'
28152 3' -64.5 NC_005887.1 + 30184 0.68 0.161473
Target:  5'- aCGCCUGCAgcuuccacuucUCGCCGGCCaGCcacgccGCGu -3'
miRNA:   3'- -GCGGGCGU-----------AGCGGCCGGcCGuca---CGC- -5'
28152 3' -64.5 NC_005887.1 + 13328 0.69 0.153208
Target:  5'- cCGgCCGCAUCGCgGaucucGCCGcGCAGUGg- -3'
miRNA:   3'- -GCgGGCGUAGCGgC-----CGGC-CGUCACgc -5'
28152 3' -64.5 NC_005887.1 + 39886 0.69 0.145328
Target:  5'- gGCCCGUcgCGCUuuauCCaGCAGUGCGa -3'
miRNA:   3'- gCGGGCGuaGCGGcc--GGcCGUCACGC- -5'
28152 3' -64.5 NC_005887.1 + 14088 0.69 0.141529
Target:  5'- gCGCCgGCggCGC--GCCGGCGGUuGCGg -3'
miRNA:   3'- -GCGGgCGuaGCGgcCGGCCGUCA-CGC- -5'
28152 3' -64.5 NC_005887.1 + 39611 0.69 0.14078
Target:  5'- aGCCCGUcgCGCgGauugggguacagaGCCGGCgccaguuGGUGCGg -3'
miRNA:   3'- gCGGGCGuaGCGgC-------------CGGCCG-------UCACGC- -5'
28152 3' -64.5 NC_005887.1 + 27264 0.69 0.14078
Target:  5'- gGCCCGCGUCGCCaaugaucGgcacgacuuccauGCCGGacaGGUGCu -3'
miRNA:   3'- gCGGGCGUAGCGG-------C-------------CGGCCg--UCACGc -5'
28152 3' -64.5 NC_005887.1 + 13381 0.69 0.13782
Target:  5'- gCGCUCGCGcugaagGCCGGCgCGGCGGacgucgGCGg -3'
miRNA:   3'- -GCGGGCGUag----CGGCCG-GCCGUCa-----CGC- -5'
28152 3' -64.5 NC_005887.1 + 1488 0.69 0.13782
Target:  5'- gGCgUGCGgcgcUCGCgCGGCgCGGCcGUGCGg -3'
miRNA:   3'- gCGgGCGU----AGCG-GCCG-GCCGuCACGC- -5'
28152 3' -64.5 NC_005887.1 + 16517 0.69 0.13782
Target:  5'- gGCCgauCGCGUCGCC-GCCGGCgccgAGUGgGc -3'
miRNA:   3'- gCGG---GCGUAGCGGcCGGCCG----UCACgC- -5'
28152 3' -64.5 NC_005887.1 + 878 0.69 0.13782
Target:  5'- gGCCCGCGcCGCCGGaCGaGuCAG-GCGg -3'
miRNA:   3'- gCGGGCGUaGCGGCCgGC-C-GUCaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.