Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28152 | 5' | -52.8 | NC_005887.1 | + | 41408 | 0.68 | 0.650106 |
Target: 5'- cGGCGCGCgGAUCGUAcucaaCCGGCGu--- -3' miRNA: 3'- -CUGCGCGaCUGGCAUa----GGCUGCuuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 4372 | 0.66 | 0.76172 |
Target: 5'- --gGCaGCUGGCCGgccUCGGCGAGGAu -3' miRNA: 3'- cugCG-CGACUGGCauaGGCUGCUUUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 41133 | 0.66 | 0.772301 |
Target: 5'- aGCGCGCgGAUCGUGUCCuuCGc--- -3' miRNA: 3'- cUGCGCGaCUGGCAUAGGcuGCuuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 13578 | 0.73 | 0.363988 |
Target: 5'- uGGCGCGCaUGcCCGUG-CCGGCGAc-- -3' miRNA: 3'- -CUGCGCG-ACuGGCAUaGGCUGCUuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 21521 | 0.72 | 0.391591 |
Target: 5'- cGACcCGCUGACCGUGcUCGACGcuGAg -3' miRNA: 3'- -CUGcGCGACUGGCAUaGGCUGCuuUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 32363 | 0.71 | 0.440512 |
Target: 5'- cGGCGCGCcGGCUGgc-CCGACGAu-- -3' miRNA: 3'- -CUGCGCGaCUGGCauaGGCUGCUuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 13105 | 0.68 | 0.661551 |
Target: 5'- cGGCGaCGCUGGCCGUguggAUCUGcuCGAGc- -3' miRNA: 3'- -CUGC-GCGACUGGCA----UAGGCu-GCUUuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 30269 | 0.73 | 0.382239 |
Target: 5'- cGACGCgGCgUGGCUGg--CCGGCGAGAAg -3' miRNA: 3'- -CUGCG-CG-ACUGGCauaGGCUGCUUUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 9890 | 0.72 | 0.391591 |
Target: 5'- -cCGCGCUGACCGgcUgCGACGc--- -3' miRNA: 3'- cuGCGCGACUGGCauAgGCUGCuuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 33799 | 0.68 | 0.627174 |
Target: 5'- cGGCGCGCUGAUCcUcgCCG-CGAu-- -3' miRNA: 3'- -CUGCGCGACUGGcAuaGGCuGCUuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 6928 | 0.7 | 0.536452 |
Target: 5'- uGCGCGUUGGCCGacgucgcgagGUCCGACa---- -3' miRNA: 3'- cUGCGCGACUGGCa---------UAGGCUGcuuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 16466 | 0.69 | 0.558824 |
Target: 5'- cAUGCGCUcGACCGcgcggcaggAUCCGGCGGGc- -3' miRNA: 3'- cUGCGCGA-CUGGCa--------UAGGCUGCUUuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 27422 | 0.69 | 0.581451 |
Target: 5'- aGCGUGCUGACCGUcuugCCGAgGc--- -3' miRNA: 3'- cUGCGCGACUGGCAua--GGCUgCuuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 4664 | 0.69 | 0.590558 |
Target: 5'- cGACGCGCaGACCGcugcgcagaCGGCGAGGGu -3' miRNA: 3'- -CUGCGCGaCUGGCauag-----GCUGCUUUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 1014 | 0.67 | 0.729163 |
Target: 5'- cGCGCGCUGuacACCGgcuugaagCgGACGAAGGa -3' miRNA: 3'- cUGCGCGAC---UGGCaua-----GgCUGCUUUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 18120 | 0.67 | 0.718083 |
Target: 5'- gGACGCGCUGuaCGcaaCCGGCGAAGc -3' miRNA: 3'- -CUGCGCGACugGCauaGGCUGCUUUu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 7962 | 0.67 | 0.695658 |
Target: 5'- cGCGCGCUGACgaagaUCGGCGAAAGc -3' miRNA: 3'- cUGCGCGACUGgcauaGGCUGCUUUU- -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 23506 | 0.67 | 0.684339 |
Target: 5'- cGACGUGUUcGGCCGcg-CUGACGAAc- -3' miRNA: 3'- -CUGCGCGA-CUGGCauaGGCUGCUUuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 18035 | 0.69 | 0.604261 |
Target: 5'- cGCGCGCcgGACUGacggCCGACGAu-- -3' miRNA: 3'- cUGCGCGa-CUGGCaua-GGCUGCUuuu -5' |
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28152 | 5' | -52.8 | NC_005887.1 | + | 12103 | 0.67 | 0.670685 |
Target: 5'- cGACGUGCUGGCCGcgcagaagcgCCagGACGAGc- -3' miRNA: 3'- -CUGCGCGACUGGCaua-------GG--CUGCUUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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