miRNA display CGI


Results 41 - 60 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 11308 0.67 0.328044
Target:  5'- gCGGCCGgCUcggcagcgaGCGC-CGCaACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA---------CGCGuGCG-UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 15988 0.67 0.327261
Target:  5'- aGGauGUCgUGCGCGCGCagacccgccgcgaGCCGGUGACg -3'
miRNA:   3'- gCCggCAG-ACGCGUGCG-------------UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 30268 0.67 0.32028
Target:  5'- -uGCCGUCcgGCGCGacgauCGUGCCGcgcACGACg -3'
miRNA:   3'- gcCGGCAGa-CGCGU-----GCGUGGC---UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 15739 0.67 0.352164
Target:  5'- gCGGCgGUgaGCuggucgagcucgGCGCGCAUCuGCGACa -3'
miRNA:   3'- -GCCGgCAgaCG------------CGUGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 27407 0.67 0.352164
Target:  5'- gCGcGCCG-CUGCGCgugGCGCAgUCGACGu- -3'
miRNA:   3'- -GC-CGGCaGACGCG---UGCGU-GGCUGCug -5'
28153 5' -60.4 NC_005887.1 + 40955 0.67 0.335946
Target:  5'- gCGGCuCGUCgucaccgucGCGUuucuucuucgACGCGCgCGGCGGCu -3'
miRNA:   3'- -GCCG-GCAGa--------CGCG----------UGCGUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 39978 0.67 0.335946
Target:  5'- cCGGCuCGaUCUGCGCG-GCACCGuAUG-Cu -3'
miRNA:   3'- -GCCG-GC-AGACGCGUgCGUGGC-UGCuG- -5'
28153 5' -60.4 NC_005887.1 + 11438 0.67 0.328044
Target:  5'- cCGGCUGcgCUGaCGCcCGCGCUGAUcaGGCu -3'
miRNA:   3'- -GCCGGCa-GAC-GCGuGCGUGGCUG--CUG- -5'
28153 5' -60.4 NC_005887.1 + 35393 0.67 0.32028
Target:  5'- cCGGCCGcCgcgGCGCGCGgCAgUGgaGCGAUg -3'
miRNA:   3'- -GCCGGCaGa--CGCGUGC-GUgGC--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 718 0.67 0.32028
Target:  5'- uCGGCgGUCaUGCGCguGCGCucGCCGcgcgcuuucaucGCGGCu -3'
miRNA:   3'- -GCCGgCAG-ACGCG--UGCG--UGGC------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 16605 0.67 0.35964
Target:  5'- aCGaGuuG-CUGaCGCGCccacucgGCGCCGGCGGCg -3'
miRNA:   3'- -GC-CggCaGAC-GCGUG-------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 18991 0.67 0.355473
Target:  5'- aCGGCCG-CUGCGagauucggugaGCGCugCGggcugccggugccggGCGACc -3'
miRNA:   3'- -GCCGGCaGACGCg----------UGCGugGC---------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 1074 0.67 0.352164
Target:  5'- -aGCCGguguaCaGCGCGCGCA-CGGCGGCc -3'
miRNA:   3'- gcCGGCa----GaCGCGUGCGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 35461 0.67 0.32028
Target:  5'- aGGCCGUgcGCGgGCGCAUCGAgcaUGAg -3'
miRNA:   3'- gCCGGCAgaCGCgUGCGUGGCU---GCUg -5'
28153 5' -60.4 NC_005887.1 + 26217 0.67 0.335946
Target:  5'- uGGCCGgcCUGCaGCugGCGCaCGGguccgauccgcuCGACg -3'
miRNA:   3'- gCCGGCa-GACG-CGugCGUG-GCU------------GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40788 0.67 0.317214
Target:  5'- cCGGCgGUCgagguucguggcgGCG-ACGCGCCGcuCGACg -3'
miRNA:   3'- -GCCGgCAGa------------CGCgUGCGUGGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 35741 0.67 0.360478
Target:  5'- cCGGCCGcCgauCGCGCGCuGCUGuauguCGACa -3'
miRNA:   3'- -GCCGGCaGac-GCGUGCG-UGGCu----GCUG- -5'
28153 5' -60.4 NC_005887.1 + 32998 0.68 0.29782
Target:  5'- uCGGUgGUCaUGCGCgacACGCuGCCGuCGAUa -3'
miRNA:   3'- -GCCGgCAG-ACGCG---UGCG-UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 33371 0.68 0.312655
Target:  5'- gCGGa----UGUGCACGCGCCGGCGcgGCa -3'
miRNA:   3'- -GCCggcagACGCGUGCGUGGCUGC--UG- -5'
28153 5' -60.4 NC_005887.1 + 35306 0.68 0.312655
Target:  5'- uCGGCCuucUCUGCaucgcuccacuGcCGCGCGCCG-CGGCg -3'
miRNA:   3'- -GCCGGc--AGACG-----------C-GUGCGUGGCuGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.