miRNA display CGI


Results 21 - 40 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 15914 0.66 0.386232
Target:  5'- uGGCCGacCUGCGUuccGCGCggGCCGGaauCGAUg -3'
miRNA:   3'- gCCGGCa-GACGCG---UGCG--UGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 26393 0.66 0.368928
Target:  5'- gCGGaUCGUCUGCGgguuCugGUcgaGCUGGCGGCc -3'
miRNA:   3'- -GCC-GGCAGACGC----GugCG---UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 3680 0.66 0.368928
Target:  5'- aCGGCCGaagcgCUGCGCG-GC-CUGGCG-Ca -3'
miRNA:   3'- -GCCGGCa----GACGCGUgCGuGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 17756 0.66 0.368928
Target:  5'- cCGGCCGUCa-CGaacauCGUGCCGACGuCg -3'
miRNA:   3'- -GCCGGCAGacGCgu---GCGUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 32422 0.66 0.386232
Target:  5'- uGGCCGgcgGCG-AUGUgGCCGGCGGCg -3'
miRNA:   3'- gCCGGCagaCGCgUGCG-UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 34275 0.66 0.386232
Target:  5'- gCGGCU---UGCGCAUGCcgucGCCGuGCGGCu -3'
miRNA:   3'- -GCCGGcagACGCGUGCG----UGGC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 33620 0.66 0.374924
Target:  5'- gCGGCgugGUCUucgaacuucccguaGCGCGCGCugCGcuCGGCg -3'
miRNA:   3'- -GCCGg--CAGA--------------CGCGUGCGugGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 24988 0.66 0.377513
Target:  5'- aGGUCGggguagUUGCcgagcgucaGCuCGCGCCGGCGGCc -3'
miRNA:   3'- gCCGGCa-----GACG---------CGuGCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 30780 0.66 0.377513
Target:  5'- gCGGCgaGuuccuUCUGCGCgcgaucaauggcGCGCACCG-CGGCc -3'
miRNA:   3'- -GCCGg-C-----AGACGCG------------UGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 36315 0.66 0.368928
Target:  5'- aGGCaCGgCcGCGCACGaGCUGGCGAa -3'
miRNA:   3'- gCCG-GCaGaCGCGUGCgUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 40788 0.67 0.317214
Target:  5'- cCGGCgGUCgagguucguggcgGCG-ACGCGCCGcuCGACg -3'
miRNA:   3'- -GCCGgCAGa------------CGCgUGCGUGGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 11308 0.67 0.328044
Target:  5'- gCGGCCGgCUcggcagcgaGCGC-CGCaACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA---------CGCGuGCG-UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14842 0.67 0.34156
Target:  5'- gGGCaCGUUcgcgggcgUGCacaccgcagcaacaGCGCGCACCGcGCGGCa -3'
miRNA:   3'- gCCG-GCAG--------ACG--------------CGUGCGUGGC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 12566 0.67 0.335946
Target:  5'- aCGGCCGccggcaUGCGCAUGgugucCGCCGAccCGGCc -3'
miRNA:   3'- -GCCGGCag----ACGCGUGC-----GUGGCU--GCUG- -5'
28153 5' -60.4 NC_005887.1 + 15631 0.67 0.343986
Target:  5'- gCGGCCGggCUcgccgaucaggGCGCcgugucgcagauGCGCGCCGAgcuCGACc -3'
miRNA:   3'- -GCCGGCa-GA-----------CGCG------------UGCGUGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 13146 0.67 0.343986
Target:  5'- gGGCCucGUCUcgucgcuugccGCGCGCGCGCaGACaGCg -3'
miRNA:   3'- gCCGG--CAGA-----------CGCGUGCGUGgCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 16408 0.67 0.352164
Target:  5'- cCGGCCGgaaGCuCACGCagGCCGAgauCGACg -3'
miRNA:   3'- -GCCGGCagaCGcGUGCG--UGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40516 0.67 0.358804
Target:  5'- uCGGCauccaccacgCgGCGCGCgGCAgCGACGACg -3'
miRNA:   3'- -GCCGgca-------GaCGCGUG-CGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 18377 0.67 0.360478
Target:  5'- aCGGCgCGcCgGCGCuCGCGaacCCGAUGGCc -3'
miRNA:   3'- -GCCG-GCaGaCGCGuGCGU---GGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 30268 0.67 0.32028
Target:  5'- -uGCCGUCcgGCGCGacgauCGUGCCGcgcACGACg -3'
miRNA:   3'- gcCGGCAGa-CGCGU-----GCGUGGC---UGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.