miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 8157 0.69 0.243944
Target:  5'- gCGGCgagCUGCGCGCGCGCUuucguGaACGACc -3'
miRNA:   3'- -GCCGgcaGACGCGUGCGUGG-----C-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 8995 0.69 0.243944
Target:  5'- -aGCUG-CUGCGCACaaGCgCGACGACg -3'
miRNA:   3'- gcCGGCaGACGCGUGcgUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10090 0.71 0.188259
Target:  5'- -cGUCGUgUGgGCGgccCGCGCCGACGGCc -3'
miRNA:   3'- gcCGGCAgACgCGU---GCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10161 0.74 0.109554
Target:  5'- uGGCCGUCgGCGCGgGCcGCCcacACGACg -3'
miRNA:   3'- gCCGGCAGaCGCGUgCG-UGGc--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10283 0.76 0.078374
Target:  5'- aCGcGCCGUCcgGCGCGgGCAUCGacGCGACg -3'
miRNA:   3'- -GC-CGGCAGa-CGCGUgCGUGGC--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10523 0.68 0.30295
Target:  5'- cCGGCCGUaaccguacgcgauggGUGCACuGCGCCGucggucagaccGCGACc -3'
miRNA:   3'- -GCCGGCAga-------------CGCGUG-CGUGGC-----------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10926 0.69 0.263136
Target:  5'- uCGGCCGgcCUGCuCACGC-CCGAUuACg -3'
miRNA:   3'- -GCCGGCa-GACGcGUGCGuGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 10974 0.69 0.256606
Target:  5'- cCGGCCGacgucaUCUGCGCcggcugcaggUGCACCGACa-- -3'
miRNA:   3'- -GCCGGC------AGACGCGu---------GCGUGGCUGcug -5'
28153 5' -60.4 NC_005887.1 + 11107 0.69 0.25596
Target:  5'- uCGGCUGg-UGCGCGCgaagcuggccgagGCGCCGugGCGGCg -3'
miRNA:   3'- -GCCGGCagACGCGUG-------------CGUGGC--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11175 0.66 0.377513
Target:  5'- uCGGCCaG-CUuCGCGCGCACCaGcCGAUg -3'
miRNA:   3'- -GCCGG-CaGAcGCGUGCGUGG-CuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11296 0.72 0.169757
Target:  5'- gCGGCCaUCgaccguauauuuccgGCGCACGCcuUCGGCGACg -3'
miRNA:   3'- -GCCGGcAGa--------------CGCGUGCGu-GGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11308 0.67 0.328044
Target:  5'- gCGGCCGgCUcggcagcgaGCGC-CGCaACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA---------CGCGuGCG-UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11377 0.73 0.140215
Target:  5'- gCGGgCGUCaGCGCAgccggaGCGCUGGCGGCc -3'
miRNA:   3'- -GCCgGCAGaCGCGUg-----CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11390 0.73 0.140215
Target:  5'- cCGGCCGUCgcgguugcgGCGCuCGCuGCCGAgcCGGCc -3'
miRNA:   3'- -GCCGGCAGa--------CGCGuGCG-UGGCU--GCUG- -5'
28153 5' -60.4 NC_005887.1 + 11438 0.67 0.328044
Target:  5'- cCGGCUGcgCUGaCGCcCGCGCUGAUcaGGCu -3'
miRNA:   3'- -GCCGGCa-GAC-GCGuGCGUGGCUG--CUG- -5'
28153 5' -60.4 NC_005887.1 + 11878 0.66 0.41317
Target:  5'- aGGCCGcCgccugccuuaGCGUACGaACCGACGcCg -3'
miRNA:   3'- gCCGGCaGa---------CGCGUGCgUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 12566 0.67 0.335946
Target:  5'- aCGGCCGccggcaUGCGCAUGgugucCGCCGAccCGGCc -3'
miRNA:   3'- -GCCGGCag----ACGCGUGC-----GUGGCU--GCUG- -5'
28153 5' -60.4 NC_005887.1 + 12647 0.71 0.181902
Target:  5'- gCGGCCGggucggcggacaccaUGCGCAUGCcggcgGCCGuCGACg -3'
miRNA:   3'- -GCCGGCag-------------ACGCGUGCG-----UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 13146 0.67 0.343986
Target:  5'- gGGCCucGUCUcgucgcuugccGCGCGCGCGCaGACaGCg -3'
miRNA:   3'- gCCGG--CAGA-----------CGCGUGCGUGgCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 13227 0.81 0.033299
Target:  5'- -cGCUGUCUGCGCGCGCGCgGcaaGCGACg -3'
miRNA:   3'- gcCGGCAGACGCGUGCGUGgC---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.