miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 312 0.72 0.169304
Target:  5'- aGGCCGcggUGCGCGCGUacACCGAgGAa -3'
miRNA:   3'- gCCGGCag-ACGCGUGCG--UGGCUgCUg -5'
28153 5' -60.4 NC_005887.1 + 395 0.66 0.383602
Target:  5'- aCGGCUcgcgcacuuccucgGUgUaCGCGCGCACCG-CGGCc -3'
miRNA:   3'- -GCCGG--------------CAgAcGCGUGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 538 0.71 0.188259
Target:  5'- uCGGCCG-CcGCGCGcCGCGCCGGauACa -3'
miRNA:   3'- -GCCGGCaGaCGCGU-GCGUGGCUgcUG- -5'
28153 5' -60.4 NC_005887.1 + 622 0.69 0.261163
Target:  5'- cCGGCgGUCUucgcgcuguauccgGCGCG-GCGCgCGGCGGCc -3'
miRNA:   3'- -GCCGgCAGA--------------CGCGUgCGUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 718 0.67 0.32028
Target:  5'- uCGGCgGUCaUGCGCguGCGCucGCCGcgcgcuuucaucGCGGCu -3'
miRNA:   3'- -GCCGgCAG-ACGCG--UGCG--UGGC------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 1002 0.73 0.136454
Target:  5'- cCGGCCGcCgUGCGCGCGCuguacACCGGCuugaagcgGACg -3'
miRNA:   3'- -GCCGGCaG-ACGCGUGCG-----UGGCUG--------CUG- -5'
28153 5' -60.4 NC_005887.1 + 1074 0.67 0.352164
Target:  5'- -aGCCGguguaCaGCGCGCGCA-CGGCGGCc -3'
miRNA:   3'- gcCGGCa----GaCGCGUGCGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 1509 0.66 0.412254
Target:  5'- gCGGCCGU--GCGgaaCACGUACCcggaccugcugucGACGACc -3'
miRNA:   3'- -GCCGGCAgaCGC---GUGCGUGG-------------CUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 1557 0.69 0.263136
Target:  5'- aCGGCCGcgCcGCGCGaGCGCCGcACGcCg -3'
miRNA:   3'- -GCCGGCa-GaCGCGUgCGUGGC-UGCuG- -5'
28153 5' -60.4 NC_005887.1 + 2348 0.69 0.256606
Target:  5'- cCGGCgGgcgacCaGCGCuCGCagGCCGACGACg -3'
miRNA:   3'- -GCCGgCa----GaCGCGuGCG--UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 2462 0.69 0.263136
Target:  5'- gGcGCCGUCgacgagGCGCugACGCGgaucaUCGACGGCg -3'
miRNA:   3'- gC-CGGCAGa-----CGCG--UGCGU-----GGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 2927 0.71 0.183352
Target:  5'- -cGCCGccaagCUGCGCAaGCGCCG-CGGCa -3'
miRNA:   3'- gcCGGCa----GACGCGUgCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 3680 0.66 0.368928
Target:  5'- aCGGCCGaagcgCUGCGCG-GC-CUGGCG-Ca -3'
miRNA:   3'- -GCCGGCa----GACGCGUgCGuGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 3708 0.72 0.16484
Target:  5'- -cGCCGUCgaGC-CGCGCGCCGACcGCg -3'
miRNA:   3'- gcCGGCAGa-CGcGUGCGUGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 3797 0.75 0.098046
Target:  5'- gCGGCCGUCcagcuUGCGCggaucgcggucgGCGCGCggcuCGACGGCg -3'
miRNA:   3'- -GCCGGCAG-----ACGCG------------UGCGUG----GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 4539 0.67 0.343986
Target:  5'- cCGGUCGag-GCGaugaGCACCGACGAg -3'
miRNA:   3'- -GCCGGCagaCGCgug-CGUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 4732 0.73 0.136826
Target:  5'- -cGCCGUCUGCGCagcggucugcgcgucGCugagauccuugaucGCGCCGGCGGCc -3'
miRNA:   3'- gcCGGCAGACGCG---------------UG--------------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 5411 0.66 0.386232
Target:  5'- cCGGCgGgcgGCGC-CGCAgCGAcCGGCg -3'
miRNA:   3'- -GCCGgCagaCGCGuGCGUgGCU-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 5484 0.72 0.169304
Target:  5'- aGGCCGaugGCGCA-GCACCGGCcGCa -3'
miRNA:   3'- gCCGGCagaCGCGUgCGUGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 7063 0.7 0.214556
Target:  5'- aCGGCauUCcgGUGCAgCGCACCGACGcGCu -3'
miRNA:   3'- -GCCGgcAGa-CGCGU-GCGUGGCUGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.