miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 32744 0.7 0.209056
Target:  5'- gCGGCg--CUcGCGUGCGCGCCGGCGcGCg -3'
miRNA:   3'- -GCCGgcaGA-CGCGUGCGUGGCUGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 17498 0.72 0.17112
Target:  5'- aCGGCCGUgCaugauggcacggaaaUGCGCACGC-UCGAgGGCg -3'
miRNA:   3'- -GCCGGCA-G---------------ACGCGUGCGuGGCUgCUG- -5'
28153 5' -60.4 NC_005887.1 + 27756 0.71 0.183352
Target:  5'- uGGCCGa-UGCcgaGCGCGCCGGCGAg -3'
miRNA:   3'- gCCGGCagACGcg-UGCGUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 2927 0.71 0.183352
Target:  5'- -cGCCGccaagCUGCGCAaGCGCCG-CGGCa -3'
miRNA:   3'- gcCGGCa----GACGCGUgCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14696 0.71 0.188259
Target:  5'- gGGCuCGUCgcgGCGgGCGgGCCGggcGCGGCg -3'
miRNA:   3'- gCCG-GCAGa--CGCgUGCgUGGC---UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10090 0.71 0.188259
Target:  5'- -cGUCGUgUGgGCGgccCGCGCCGACGGCc -3'
miRNA:   3'- gcCGGCAgACgCGU---GCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 538 0.71 0.188259
Target:  5'- uCGGCCG-CcGCGCGcCGCGCCGGauACa -3'
miRNA:   3'- -GCCGGCaGaCGCGU-GCGUGGCUgcUG- -5'
28153 5' -60.4 NC_005887.1 + 28392 0.71 0.19842
Target:  5'- gCGGCUGUCgaucacGCGCACGUcgcaGCCGAgCGcGCg -3'
miRNA:   3'- -GCCGGCAGa-----CGCGUGCG----UGGCU-GC-UG- -5'
28153 5' -60.4 NC_005887.1 + 40669 0.7 0.20421
Target:  5'- cCGGCCG-CaccauccugcaccugGCGCGCGCGCaCGGCuGGCa -3'
miRNA:   3'- -GCCGGCaGa--------------CGCGUGCGUG-GCUG-CUG- -5'
28153 5' -60.4 NC_005887.1 + 312 0.72 0.169304
Target:  5'- aGGCCGcggUGCGCGCGUacACCGAgGAa -3'
miRNA:   3'- gCCGGCag-ACGCGUGCG--UGGCUgCUg -5'
28153 5' -60.4 NC_005887.1 + 5484 0.72 0.169304
Target:  5'- aGGCCGaugGCGCA-GCACCGGCcGCa -3'
miRNA:   3'- gCCGGCagaCGCGUgCGUGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 36304 0.72 0.168403
Target:  5'- uGGCCGaUCUGCGCggcggucgacgccGCGCACuCGAuccagguauaggcCGACg -3'
miRNA:   3'- gCCGGC-AGACGCG-------------UGCGUG-GCU-------------GCUG- -5'
28153 5' -60.4 NC_005887.1 + 14612 0.78 0.057402
Target:  5'- aCGGCCGUCgGCGCcgucgaggGCGCGCUcACGGCa -3'
miRNA:   3'- -GCCGGCAGaCGCG--------UGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14534 0.73 0.132785
Target:  5'- gCGGCCGUCgGCG-GCGCGUCGAuCGGCa -3'
miRNA:   3'- -GCCGGCAGaCGCgUGCGUGGCU-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 1002 0.73 0.136454
Target:  5'- cCGGCCGcCgUGCGCGCGCuguacACCGGCuugaagcgGACg -3'
miRNA:   3'- -GCCGGCaG-ACGCGUGCG-----UGGCUG--------CUG- -5'
28153 5' -60.4 NC_005887.1 + 11377 0.73 0.140215
Target:  5'- gCGGgCGUCaGCGCAgccggaGCGCUGGCGGCc -3'
miRNA:   3'- -GCCgGCAGaCGCGUg-----CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 34704 0.73 0.144071
Target:  5'- gCGGCCGUCgucGCGCuuGCgguGCgCGGCGAUg -3'
miRNA:   3'- -GCCGGCAGa--CGCGugCG---UG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40906 0.72 0.152076
Target:  5'- aCGaGCCGcCgaaggcuaccGCGCGCGCACCGAguuCGGCa -3'
miRNA:   3'- -GC-CGGCaGa---------CGCGUGCGUGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 18324 0.72 0.156227
Target:  5'- gCGGCa--CUGgGgGCGCAUCGGCGACa -3'
miRNA:   3'- -GCCGgcaGACgCgUGCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 3708 0.72 0.16484
Target:  5'- -cGCCGUCgaGC-CGCGCGCCGACcGCg -3'
miRNA:   3'- gcCGGCAGa-CGcGUGCGUGGCUGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.