miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 23940 0.96 0.00234
Target:  5'- uCGGCCucgcggcGUCUGCGCACGCACCGACGACc -3'
miRNA:   3'- -GCCGG-------CAGACGCGUGCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 13227 0.81 0.033299
Target:  5'- -cGCUGUCUGCGCGCGCGCgGcaaGCGACg -3'
miRNA:   3'- gcCGGCAGACGCGUGCGUGgC---UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14454 0.81 0.034272
Target:  5'- aGGUCGUacGCGCGCGCGCCGAgCGGCg -3'
miRNA:   3'- gCCGGCAgaCGCGUGCGUGGCU-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 14612 0.78 0.057402
Target:  5'- aCGGCCGUCgGCGCcgucgaggGCGCGCUcACGGCa -3'
miRNA:   3'- -GCCGGCAGaCGCG--------UGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 16058 0.78 0.059059
Target:  5'- gCGGCgGgUCUGCGCGCGCACgacauccuCGACGAa -3'
miRNA:   3'- -GCCGgC-AGACGCGUGCGUG--------GCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 32829 0.76 0.07408
Target:  5'- aCGaGCCGgCUGCaugGCGCGCGCCGGCGcGCa -3'
miRNA:   3'- -GC-CGGCaGACG---CGUGCGUGGCUGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 10283 0.76 0.078374
Target:  5'- aCGcGCCGUCcgGCGCGgGCAUCGacGCGACg -3'
miRNA:   3'- -GC-CGGCAGa-CGCGUgCGUGGC--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14688 0.76 0.08061
Target:  5'- -uGCCGUgaGCGCGCccucgacgGCGCCGACGGCc -3'
miRNA:   3'- gcCGGCAgaCGCGUG--------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 3797 0.75 0.098046
Target:  5'- gCGGCCGUCcagcuUGCGCggaucgcggucgGCGCGCggcuCGACGGCg -3'
miRNA:   3'- -GCCGGCAG-----ACGCG------------UGCGUG----GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 10161 0.74 0.109554
Target:  5'- uGGCCGUCgGCGCGgGCcGCCcacACGACg -3'
miRNA:   3'- gCCGGCAGaCGCGUgCG-UGGc--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 18098 0.74 0.112623
Target:  5'- uCGGCCGUCaguccgGCGCGCGUAagCGcGCGGCg -3'
miRNA:   3'- -GCCGGCAGa-----CGCGUGCGUg-GC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 17355 0.73 0.12572
Target:  5'- cCGG-CGUUUGCGCGCGCggcGCCGccCGACg -3'
miRNA:   3'- -GCCgGCAGACGCGUGCG---UGGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40093 0.73 0.12572
Target:  5'- cCGGCCGcCUcgagccGCGCcaugauGCGCACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA------CGCG------UGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 14534 0.73 0.132785
Target:  5'- gCGGCCGUCgGCG-GCGCGUCGAuCGGCa -3'
miRNA:   3'- -GCCGGCAGaCGCgUGCGUGGCU-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 1002 0.73 0.136454
Target:  5'- cCGGCCGcCgUGCGCGCGCuguacACCGGCuugaagcgGACg -3'
miRNA:   3'- -GCCGGCaG-ACGCGUGCG-----UGGCUG--------CUG- -5'
28153 5' -60.4 NC_005887.1 + 4732 0.73 0.136826
Target:  5'- -cGCCGUCUGCGCagcggucugcgcgucGCugagauccuugaucGCGCCGGCGGCc -3'
miRNA:   3'- gcCGGCAGACGCG---------------UG--------------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11390 0.73 0.140215
Target:  5'- cCGGCCGUCgcgguugcgGCGCuCGCuGCCGAgcCGGCc -3'
miRNA:   3'- -GCCGGCAGa--------CGCGuGCG-UGGCU--GCUG- -5'
28153 5' -60.4 NC_005887.1 + 11377 0.73 0.140215
Target:  5'- gCGGgCGUCaGCGCAgccggaGCGCUGGCGGCc -3'
miRNA:   3'- -GCCgGCAGaCGCGUg-----CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 34704 0.73 0.144071
Target:  5'- gCGGCCGUCgucGCGCuuGCgguGCgCGGCGAUg -3'
miRNA:   3'- -GCCGGCAGa--CGCGugCG---UG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40906 0.72 0.152076
Target:  5'- aCGaGCCGcCgaaggcuaccGCGCGCGCACCGAguuCGGCa -3'
miRNA:   3'- -GC-CGGCaGa---------CGCGUGCGUGGCU---GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.