Results 21 - 40 of 138 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 24017 | 0.72 | 0.155808 |
Target: 5'- aGGUCGUCggUGCGUGCGCagacggccgcgagGCCGACGuCa -3' miRNA: 3'- gCCGGCAG--ACGCGUGCG-------------UGGCUGCuG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 18324 | 0.72 | 0.156227 |
Target: 5'- gCGGCa--CUGgGgGCGCAUCGGCGACa -3' miRNA: 3'- -GCCGgcaGACgCgUGCGUGGCUGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 3708 | 0.72 | 0.16484 |
Target: 5'- -cGCCGUCgaGC-CGCGCGCCGACcGCg -3' miRNA: 3'- gcCGGCAGa-CGcGUGCGUGGCUGcUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 36304 | 0.72 | 0.168403 |
Target: 5'- uGGCCGaUCUGCGCggcggucgacgccGCGCACuCGAuccagguauaggcCGACg -3' miRNA: 3'- gCCGGC-AGACGCG-------------UGCGUG-GCU-------------GCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 312 | 0.72 | 0.169304 |
Target: 5'- aGGCCGcggUGCGCGCGUacACCGAgGAa -3' miRNA: 3'- gCCGGCag-ACGCGUGCG--UGGCUgCUg -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 5484 | 0.72 | 0.169304 |
Target: 5'- aGGCCGaugGCGCA-GCACCGGCcGCa -3' miRNA: 3'- gCCGGCagaCGCGUgCGUGGCUGcUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 11296 | 0.72 | 0.169757 |
Target: 5'- gCGGCCaUCgaccguauauuuccgGCGCACGCcuUCGGCGACg -3' miRNA: 3'- -GCCGGcAGa--------------CGCGUGCGu-GGCUGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 17498 | 0.72 | 0.17112 |
Target: 5'- aCGGCCGUgCaugauggcacggaaaUGCGCACGC-UCGAgGGCg -3' miRNA: 3'- -GCCGGCA-G---------------ACGCGUGCGuGGCUgCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 14106 | 0.71 | 0.178558 |
Target: 5'- aCGGCauCGUCucaggcUGCGCcggcgGCGCGCCGGCGGu -3' miRNA: 3'- -GCCG--GCAG------ACGCG-----UGCGUGGCUGCUg -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 12647 | 0.71 | 0.181902 |
Target: 5'- gCGGCCGggucggcggacaccaUGCGCAUGCcggcgGCCGuCGACg -3' miRNA: 3'- -GCCGGCag-------------ACGCGUGCG-----UGGCuGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 27756 | 0.71 | 0.183352 |
Target: 5'- uGGCCGa-UGCcgaGCGCGCCGGCGAg -3' miRNA: 3'- gCCGGCagACGcg-UGCGUGGCUGCUg -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 2927 | 0.71 | 0.183352 |
Target: 5'- -cGCCGccaagCUGCGCAaGCGCCG-CGGCa -3' miRNA: 3'- gcCGGCa----GACGCGUgCGUGGCuGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 37683 | 0.71 | 0.187763 |
Target: 5'- aCGGCCuGguguaUGCGCgugacgcGCGCACUGACGAg -3' miRNA: 3'- -GCCGG-Cag---ACGCG-------UGCGUGGCUGCUg -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 14696 | 0.71 | 0.188259 |
Target: 5'- gGGCuCGUCgcgGCGgGCGgGCCGggcGCGGCg -3' miRNA: 3'- gCCG-GCAGa--CGCgUGCgUGGC---UGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 538 | 0.71 | 0.188259 |
Target: 5'- uCGGCCG-CcGCGCGcCGCGCCGGauACa -3' miRNA: 3'- -GCCGGCaGaCGCGU-GCGUGGCUgcUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 10090 | 0.71 | 0.188259 |
Target: 5'- -cGUCGUgUGgGCGgccCGCGCCGACGGCc -3' miRNA: 3'- gcCGGCAgACgCGU---GCGUGGCUGCUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 28392 | 0.71 | 0.19842 |
Target: 5'- gCGGCUGUCgaucacGCGCACGUcgcaGCCGAgCGcGCg -3' miRNA: 3'- -GCCGGCAGa-----CGCGUGCG----UGGCU-GC-UG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 27207 | 0.71 | 0.19842 |
Target: 5'- uGGCCGUUcgGC-CGCGUgaucGCCGACGAg -3' miRNA: 3'- gCCGGCAGa-CGcGUGCG----UGGCUGCUg -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 40669 | 0.7 | 0.20421 |
Target: 5'- cCGGCCG-CaccauccugcaccugGCGCGCGCGCaCGGCuGGCa -3' miRNA: 3'- -GCCGGCaGa--------------CGCGUGCGUG-GCUG-CUG- -5' |
|||||||
28153 | 5' | -60.4 | NC_005887.1 | + | 32744 | 0.7 | 0.209056 |
Target: 5'- gCGGCg--CUcGCGUGCGCGCCGGCGcGCg -3' miRNA: 3'- -GCCGgcaGA-CGCGUGCGUGGCUGC-UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home