miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 19573 0.66 0.386232
Target:  5'- aGGUCGcCUGCGCcgAUGCucGCCGGCa-- -3'
miRNA:   3'- gCCGGCaGACGCG--UGCG--UGGCUGcug -5'
28153 5' -60.4 NC_005887.1 + 395 0.66 0.383602
Target:  5'- aCGGCUcgcgcacuuccucgGUgUaCGCGCGCACCG-CGGCc -3'
miRNA:   3'- -GCCGG--------------CAgAcGCGUGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 30780 0.66 0.377513
Target:  5'- gCGGCgaGuuccuUCUGCGCgcgaucaauggcGCGCACCG-CGGCc -3'
miRNA:   3'- -GCCGg-C-----AGACGCG------------UGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11175 0.66 0.377513
Target:  5'- uCGGCCaG-CUuCGCGCGCACCaGcCGAUg -3'
miRNA:   3'- -GCCGG-CaGAcGCGUGCGUGG-CuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 24988 0.66 0.377513
Target:  5'- aGGUCGggguagUUGCcgagcgucaGCuCGCGCCGGCGGCc -3'
miRNA:   3'- gCCGGCa-----GACG---------CGuGCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 33620 0.66 0.374924
Target:  5'- gCGGCgugGUCUucgaacuucccguaGCGCGCGCugCGcuCGGCg -3'
miRNA:   3'- -GCCGg--CAGA--------------CGCGUGCGugGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 17756 0.66 0.368928
Target:  5'- cCGGCCGUCa-CGaacauCGUGCCGACGuCg -3'
miRNA:   3'- -GCCGGCAGacGCgu---GCGUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 36315 0.66 0.368928
Target:  5'- aGGCaCGgCcGCGCACGaGCUGGCGAa -3'
miRNA:   3'- gCCG-GCaGaCGCGUGCgUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 3680 0.66 0.368928
Target:  5'- aCGGCCGaagcgCUGCGCG-GC-CUGGCG-Ca -3'
miRNA:   3'- -GCCGGCa----GACGCGUgCGuGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 26393 0.66 0.368928
Target:  5'- gCGGaUCGUCUGCGgguuCugGUcgaGCUGGCGGCc -3'
miRNA:   3'- -GCC-GGCAGACGC----GugCG---UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 18377 0.67 0.360478
Target:  5'- aCGGCgCGcCgGCGCuCGCGaacCCGAUGGCc -3'
miRNA:   3'- -GCCG-GCaGaCGCGuGCGU---GGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 35741 0.67 0.360478
Target:  5'- cCGGCCGcCgauCGCGCGCuGCUGuauguCGACa -3'
miRNA:   3'- -GCCGGCaGac-GCGUGCG-UGGCu----GCUG- -5'
28153 5' -60.4 NC_005887.1 + 16605 0.67 0.35964
Target:  5'- aCGaGuuG-CUGaCGCGCccacucgGCGCCGGCGGCg -3'
miRNA:   3'- -GC-CggCaGAC-GCGUG-------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40516 0.67 0.358804
Target:  5'- uCGGCauccaccacgCgGCGCGCgGCAgCGACGACg -3'
miRNA:   3'- -GCCGgca-------GaCGCGUG-CGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 18991 0.67 0.355473
Target:  5'- aCGGCCG-CUGCGagauucggugaGCGCugCGggcugccggugccggGCGACc -3'
miRNA:   3'- -GCCGGCaGACGCg----------UGCGugGC---------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 16408 0.67 0.352164
Target:  5'- cCGGCCGgaaGCuCACGCagGCCGAgauCGACg -3'
miRNA:   3'- -GCCGGCagaCGcGUGCG--UGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 15739 0.67 0.352164
Target:  5'- gCGGCgGUgaGCuggucgagcucgGCGCGCAUCuGCGACa -3'
miRNA:   3'- -GCCGgCAgaCG------------CGUGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 1074 0.67 0.352164
Target:  5'- -aGCCGguguaCaGCGCGCGCA-CGGCGGCc -3'
miRNA:   3'- gcCGGCa----GaCGCGUGCGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 27407 0.67 0.352164
Target:  5'- gCGcGCCG-CUGCGCgugGCGCAgUCGACGu- -3'
miRNA:   3'- -GC-CGGCaGACGCG---UGCGU-GGCUGCug -5'
28153 5' -60.4 NC_005887.1 + 4539 0.67 0.343986
Target:  5'- cCGGUCGag-GCGaugaGCACCGACGAg -3'
miRNA:   3'- -GCCGGCagaCGCgug-CGUGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.