miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 13146 0.67 0.343986
Target:  5'- gGGCCucGUCUcgucgcuugccGCGCGCGCGCaGACaGCg -3'
miRNA:   3'- gCCGG--CAGA-----------CGCGUGCGUGgCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 15631 0.67 0.343986
Target:  5'- gCGGCCGggCUcgccgaucaggGCGCcgugucgcagauGCGCGCCGAgcuCGACc -3'
miRNA:   3'- -GCCGGCa-GA-----------CGCG------------UGCGUGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 4539 0.67 0.343986
Target:  5'- cCGGUCGag-GCGaugaGCACCGACGAg -3'
miRNA:   3'- -GCCGGCagaCGCgug-CGUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 14842 0.67 0.34156
Target:  5'- gGGCaCGUUcgcgggcgUGCacaccgcagcaacaGCGCGCACCGcGCGGCa -3'
miRNA:   3'- gCCG-GCAG--------ACG--------------CGUGCGUGGC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 26217 0.67 0.335946
Target:  5'- uGGCCGgcCUGCaGCugGCGCaCGGguccgauccgcuCGACg -3'
miRNA:   3'- gCCGGCa-GACG-CGugCGUG-GCU------------GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40955 0.67 0.335946
Target:  5'- gCGGCuCGUCgucaccgucGCGUuucuucuucgACGCGCgCGGCGGCu -3'
miRNA:   3'- -GCCG-GCAGa--------CGCG----------UGCGUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 39978 0.67 0.335946
Target:  5'- cCGGCuCGaUCUGCGCG-GCACCGuAUG-Cu -3'
miRNA:   3'- -GCCG-GC-AGACGCGUgCGUGGC-UGCuG- -5'
28153 5' -60.4 NC_005887.1 + 12566 0.67 0.335946
Target:  5'- aCGGCCGccggcaUGCGCAUGgugucCGCCGAccCGGCc -3'
miRNA:   3'- -GCCGGCag----ACGCGUGC-----GUGGCU--GCUG- -5'
28153 5' -60.4 NC_005887.1 + 11308 0.67 0.328044
Target:  5'- gCGGCCGgCUcggcagcgaGCGC-CGCaACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA---------CGCGuGCG-UGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11438 0.67 0.328044
Target:  5'- cCGGCUGcgCUGaCGCcCGCGCUGAUcaGGCu -3'
miRNA:   3'- -GCCGGCa-GAC-GCGuGCGUGGCUG--CUG- -5'
28153 5' -60.4 NC_005887.1 + 15988 0.67 0.327261
Target:  5'- aGGauGUCgUGCGCGCGCagacccgccgcgaGCCGGUGACg -3'
miRNA:   3'- gCCggCAG-ACGCGUGCG-------------UGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 35461 0.67 0.32028
Target:  5'- aGGCCGUgcGCGgGCGCAUCGAgcaUGAg -3'
miRNA:   3'- gCCGGCAgaCGCgUGCGUGGCU---GCUg -5'
28153 5' -60.4 NC_005887.1 + 35393 0.67 0.32028
Target:  5'- cCGGCCGcCgcgGCGCGCGgCAgUGgaGCGAUg -3'
miRNA:   3'- -GCCGGCaGa--CGCGUGC-GUgGC--UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 30268 0.67 0.32028
Target:  5'- -uGCCGUCcgGCGCGacgauCGUGCCGcgcACGACg -3'
miRNA:   3'- gcCGGCAGa-CGCGU-----GCGUGGC---UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 718 0.67 0.32028
Target:  5'- uCGGCgGUCaUGCGCguGCGCucGCCGcgcgcuuucaucGCGGCu -3'
miRNA:   3'- -GCCGgCAG-ACGCG--UGCG--UGGC------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 26494 0.67 0.32028
Target:  5'- gCGGCUG-CaGCGCGCGUucCCGcGCGGCc -3'
miRNA:   3'- -GCCGGCaGaCGCGUGCGu-GGC-UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40788 0.67 0.317214
Target:  5'- cCGGCgGUCgagguucguggcgGCG-ACGCGCCGcuCGACg -3'
miRNA:   3'- -GCCGgCAGa------------CGCgUGCGUGGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 33371 0.68 0.312655
Target:  5'- gCGGa----UGUGCACGCGCCGGCGcgGCa -3'
miRNA:   3'- -GCCggcagACGCGUGCGUGGCUGC--UG- -5'
28153 5' -60.4 NC_005887.1 + 35306 0.68 0.312655
Target:  5'- uCGGCCuucUCUGCaucgcuccacuGcCGCGCGCCG-CGGCg -3'
miRNA:   3'- -GCCGGc--AGACG-----------C-GUGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 37061 0.68 0.312655
Target:  5'- aCGGCC---UGCGCGUGCucGCCGGCGAg -3'
miRNA:   3'- -GCCGGcagACGCGUGCG--UGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.