miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 16450 0.66 0.41317
Target:  5'- gCGGCCGUCU-CGacUGCAUUGACGcACu -3'
miRNA:   3'- -GCCGGCAGAcGCguGCGUGGCUGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 18991 0.67 0.355473
Target:  5'- aCGGCCG-CUGCGagauucggugaGCGCugCGggcugccggugccggGCGACc -3'
miRNA:   3'- -GCCGGCaGACGCg----------UGCGugGC---------------UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 15739 0.67 0.352164
Target:  5'- gCGGCgGUgaGCuggucgagcucgGCGCGCAUCuGCGACa -3'
miRNA:   3'- -GCCGgCAgaCG------------CGUGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 13227 0.81 0.033299
Target:  5'- -cGCUGUCUGCGCGCGCGCgGcaaGCGACg -3'
miRNA:   3'- gcCGGCAGACGCGUGCGUGgC---UGCUG- -5'
28153 5' -60.4 NC_005887.1 + 27310 0.66 0.403159
Target:  5'- gGGCCGgc-GCGCGaugcaguUGCGCCG-CGAUg -3'
miRNA:   3'- gCCGGCagaCGCGU-------GCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 21673 0.66 0.400455
Target:  5'- cCGGCUGa-UGCGUuaucguucgugguCGUGCCGACGAUg -3'
miRNA:   3'- -GCCGGCagACGCGu------------GCGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 21891 0.66 0.395082
Target:  5'- uGGCCGUUucauucgGCGCGCccggcaGCGCCG-CgGACg -3'
miRNA:   3'- gCCGGCAGa------CGCGUG------CGUGGCuG-CUG- -5'
28153 5' -60.4 NC_005887.1 + 19573 0.66 0.386232
Target:  5'- aGGUCGcCUGCGCcgAUGCucGCCGGCa-- -3'
miRNA:   3'- gCCGGCaGACGCG--UGCG--UGGCUGcug -5'
28153 5' -60.4 NC_005887.1 + 11175 0.66 0.377513
Target:  5'- uCGGCCaG-CUuCGCGCGCACCaGcCGAUg -3'
miRNA:   3'- -GCCGG-CaGAcGCGUGCGUGG-CuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 16605 0.67 0.35964
Target:  5'- aCGaGuuG-CUGaCGCGCccacucgGCGCCGGCGGCg -3'
miRNA:   3'- -GC-CggCaGAC-GCGUG-------CGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 3680 0.66 0.368928
Target:  5'- aCGGCCGaagcgCUGCGCG-GC-CUGGCG-Ca -3'
miRNA:   3'- -GCCGGCa----GACGCGUgCGuGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 395 0.66 0.383602
Target:  5'- aCGGCUcgcgcacuuccucgGUgUaCGCGCGCACCG-CGGCc -3'
miRNA:   3'- -GCCGG--------------CAgAcGCGUGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 11878 0.66 0.41317
Target:  5'- aGGCCGcCgccugccuuaGCGUACGaACCGACGcCg -3'
miRNA:   3'- gCCGGCaGa---------CGCGUGCgUGGCUGCuG- -5'
28153 5' -60.4 NC_005887.1 + 36315 0.66 0.368928
Target:  5'- aGGCaCGgCcGCGCACGaGCUGGCGAa -3'
miRNA:   3'- gCCG-GCaGaCGCGUGCgUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 23334 0.66 0.407691
Target:  5'- gCGGCaaccgccacgagCUGCGCcuuuuGCGCGCCGACcGCc -3'
miRNA:   3'- -GCCGgca---------GACGCG-----UGCGUGGCUGcUG- -5'
28153 5' -60.4 NC_005887.1 + 15153 0.66 0.386232
Target:  5'- gGGCaucaUCUGCG-ACaCGCCGGCGGCu -3'
miRNA:   3'- gCCGgc--AGACGCgUGcGUGGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 35741 0.67 0.360478
Target:  5'- cCGGCCGcCgauCGCGCGCuGCUGuauguCGACa -3'
miRNA:   3'- -GCCGGCaGac-GCGUGCG-UGGCu----GCUG- -5'
28153 5' -60.4 NC_005887.1 + 1074 0.67 0.352164
Target:  5'- -aGCCGguguaCaGCGCGCGCA-CGGCGGCc -3'
miRNA:   3'- gcCGGCa----GaCGCGUGCGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 28305 0.66 0.404062
Target:  5'- aGcGCCGcucgcgaagCUGCGCGCGCugcucaaaaccGCCGA-GACg -3'
miRNA:   3'- gC-CGGCa--------GACGCGUGCG-----------UGGCUgCUG- -5'
28153 5' -60.4 NC_005887.1 + 36236 0.66 0.395082
Target:  5'- cCGGUCGgcacgGUG-ACGCGCCG-CGACg -3'
miRNA:   3'- -GCCGGCaga--CGCgUGCGUGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.