miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28153 5' -60.4 NC_005887.1 + 42047 0.68 0.29782
Target:  5'- aGGCCGUgCUGCugauagGCgaGCGCGCCG-CGcACg -3'
miRNA:   3'- gCCGGCA-GACG------CG--UGCGUGGCuGC-UG- -5'
28153 5' -60.4 NC_005887.1 + 41614 0.68 0.312655
Target:  5'- uGGCUGaCUucGCGUGCGCGCCGAgCGcCu -3'
miRNA:   3'- gCCGGCaGA--CGCGUGCGUGGCU-GCuG- -5'
28153 5' -60.4 NC_005887.1 + 40955 0.67 0.335946
Target:  5'- gCGGCuCGUCgucaccgucGCGUuucuucuucgACGCGCgCGGCGGCu -3'
miRNA:   3'- -GCCG-GCAGa--------CGCG----------UGCGUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40906 0.72 0.152076
Target:  5'- aCGaGCCGcCgaaggcuaccGCGCGCGCACCGAguuCGGCa -3'
miRNA:   3'- -GC-CGGCaGa---------CGCGUGCGUGGCU---GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40832 0.69 0.23781
Target:  5'- cCGGCuCGgcgGCGCgcgGCGCGCCaACGGCg -3'
miRNA:   3'- -GCCG-GCagaCGCG---UGCGUGGcUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40788 0.67 0.317214
Target:  5'- cCGGCgGUCgagguucguggcgGCG-ACGCGCCGcuCGACg -3'
miRNA:   3'- -GCCGgCAGa------------CGCgUGCGUGGCu-GCUG- -5'
28153 5' -60.4 NC_005887.1 + 40760 0.7 0.231806
Target:  5'- -cGCCGUUgGCGCgccGCGCGCCGcCGAg -3'
miRNA:   3'- gcCGGCAGaCGCG---UGCGUGGCuGCUg -5'
28153 5' -60.4 NC_005887.1 + 40669 0.7 0.20421
Target:  5'- cCGGCCG-CaccauccugcaccugGCGCGCGCGCaCGGCuGGCa -3'
miRNA:   3'- -GCCGGCaGa--------------CGCGUGCGUG-GCUG-CUG- -5'
28153 5' -60.4 NC_005887.1 + 40516 0.67 0.358804
Target:  5'- uCGGCauccaccacgCgGCGCGCgGCAgCGACGACg -3'
miRNA:   3'- -GCCGgca-------GaCGCGUG-CGUgGCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40458 0.69 0.23781
Target:  5'- uCGGCCGUgCcGgGCAucacgauuuccuCGCGCgCGACGGCg -3'
miRNA:   3'- -GCCGGCA-GaCgCGU------------GCGUG-GCUGCUG- -5'
28153 5' -60.4 NC_005887.1 + 40353 0.68 0.2766
Target:  5'- uGGCCGUCgaGCGCGgcCGUGCCGcucgucgcgcGCGAg -3'
miRNA:   3'- gCCGGCAGa-CGCGU--GCGUGGC----------UGCUg -5'
28153 5' -60.4 NC_005887.1 + 40093 0.73 0.12572
Target:  5'- cCGGCCGcCUcgagccGCGCcaugauGCGCACCG-CGACg -3'
miRNA:   3'- -GCCGGCaGA------CGCG------UGCGUGGCuGCUG- -5'
28153 5' -60.4 NC_005887.1 + 39978 0.67 0.335946
Target:  5'- cCGGCuCGaUCUGCGCG-GCACCGuAUG-Cu -3'
miRNA:   3'- -GCCG-GC-AGACGCGUgCGUGGC-UGCuG- -5'
28153 5' -60.4 NC_005887.1 + 39776 0.66 0.41317
Target:  5'- uGGUCG-CgGCGCuCGCGCCGAuCGuuGCg -3'
miRNA:   3'- gCCGGCaGaCGCGuGCGUGGCU-GC--UG- -5'
28153 5' -60.4 NC_005887.1 + 37683 0.71 0.187763
Target:  5'- aCGGCCuGguguaUGCGCgugacgcGCGCACUGACGAg -3'
miRNA:   3'- -GCCGG-Cag---ACGCG-------UGCGUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 37319 0.67 0.343986
Target:  5'- uCGGUCGUC-GCaGCA-GCGCCGGCacuGGCa -3'
miRNA:   3'- -GCCGGCAGaCG-CGUgCGUGGCUG---CUG- -5'
28153 5' -60.4 NC_005887.1 + 37064 0.66 0.386232
Target:  5'- cCGGCCuUCUcgcugacgGCGUuCGCACCGAagcgGGCg -3'
miRNA:   3'- -GCCGGcAGA--------CGCGuGCGUGGCUg---CUG- -5'
28153 5' -60.4 NC_005887.1 + 37061 0.68 0.312655
Target:  5'- aCGGCC---UGCGCGUGCucGCCGGCGAg -3'
miRNA:   3'- -GCCGGcagACGCGUGCG--UGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 36315 0.66 0.368928
Target:  5'- aGGCaCGgCcGCGCACGaGCUGGCGAa -3'
miRNA:   3'- gCCG-GCaGaCGCGUGCgUGGCUGCUg -5'
28153 5' -60.4 NC_005887.1 + 36304 0.72 0.168403
Target:  5'- uGGCCGaUCUGCGCggcggucgacgccGCGCACuCGAuccagguauaggcCGACg -3'
miRNA:   3'- gCCGGC-AGACGCG-------------UGCGUG-GCU-------------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.