miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28154 5' -56.3 NC_005887.1 + 41710 0.69 0.4385
Target:  5'- gCUC-AUCaa-GGCGAuGACGGGCGGCGa -3'
miRNA:   3'- -GAGcUAGgugCUGCU-CUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 40515 0.69 0.4385
Target:  5'- uUCGGcaUCCACcACGcGGCGcGCGGCAg -3'
miRNA:   3'- gAGCU--AGGUGcUGCuCUGCuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 39968 0.71 0.32339
Target:  5'- uCUCGAUUCGCacaagGGCGAGACGccGUGGCc -3'
miRNA:   3'- -GAGCUAGGUG-----CUGCUCUGCu-CGCCGu -5'
28154 5' -56.3 NC_005887.1 + 36353 0.66 0.628694
Target:  5'- aUCGG-CCAaccgGACGAGuCGAGCGaGUAc -3'
miRNA:   3'- gAGCUaGGUg---CUGCUCuGCUCGC-CGU- -5'
28154 5' -56.3 NC_005887.1 + 36335 0.66 0.573715
Target:  5'- aCUCGAUCCAgguauaggcCGACGAGGgggacagGAGCGcGUg -3'
miRNA:   3'- -GAGCUAGGU---------GCUGCUCUg------CUCGC-CGu -5'
28154 5' -56.3 NC_005887.1 + 36221 0.66 0.584649
Target:  5'- -aCGcgCCGCGACGAGGaaacCGGCGa -3'
miRNA:   3'- gaGCuaGGUGCUGCUCUgcucGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 35184 0.67 0.541234
Target:  5'- cCUCGAccuuuuUCCaACGGCGGGGCGAuucguugcGCaGCAg -3'
miRNA:   3'- -GAGCU------AGG-UGCUGCUCUGCU--------CGcCGU- -5'
28154 5' -56.3 NC_005887.1 + 35134 0.67 0.541234
Target:  5'- aUCGGaaUCCgGCGccACG-GACGGGCGGCc -3'
miRNA:   3'- gAGCU--AGG-UGC--UGCuCUGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 34352 0.68 0.458199
Target:  5'- -cCGG-CCACGGCugGAGACGAGCGccccGCGu -3'
miRNA:   3'- gaGCUaGGUGCUG--CUCUGCUCGC----CGU- -5'
28154 5' -56.3 NC_005887.1 + 32527 0.66 0.573715
Target:  5'- aUCGAUCCGC-ACGccGCGcAGUGGCu -3'
miRNA:   3'- gAGCUAGGUGcUGCucUGC-UCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 32399 0.7 0.382462
Target:  5'- cCUCGAuacUCCuuucguCGACGuGGCcGGCGGCGa -3'
miRNA:   3'- -GAGCU---AGGu-----GCUGCuCUGcUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 32281 0.66 0.584649
Target:  5'- -cCGGUCCAC-ACGGGGCGAucgucgggccaGcCGGCGc -3'
miRNA:   3'- gaGCUAGGUGcUGCUCUGCU-----------C-GCCGU- -5'
28154 5' -56.3 NC_005887.1 + 31347 0.69 0.44829
Target:  5'- gUCGAgCU-CGACGAGGCGAucgacGCGGCc -3'
miRNA:   3'- gAGCUaGGuGCUGCUCUGCU-----CGCCGu -5'
28154 5' -56.3 NC_005887.1 + 30280 0.68 0.509391
Target:  5'- aUCGAaggCCGCGACGcGGCGuGGCuGGCc -3'
miRNA:   3'- gAGCUa--GGUGCUGCuCUGC-UCG-CCGu -5'
28154 5' -56.3 NC_005887.1 + 29998 0.7 0.382462
Target:  5'- gUCGAUCCcgagaucguGCG-CGAGGCccGCGGCAu -3'
miRNA:   3'- gAGCUAGG---------UGCuGCUCUGcuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29779 0.73 0.264538
Target:  5'- -gUGAUCCuGCGACGcgacGGCGAGUGGCu -3'
miRNA:   3'- gaGCUAGG-UGCUGCu---CUGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 29714 0.66 0.573715
Target:  5'- cCUCGcgCCGCG-CGugaguGACGA-CGGCGa -3'
miRNA:   3'- -GAGCuaGGUGCuGCu----CUGCUcGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29109 0.66 0.572624
Target:  5'- gUCGGU-CGCGACGAGcCGGGUuucguacGGCGu -3'
miRNA:   3'- gAGCUAgGUGCUGCUCuGCUCG-------CCGU- -5'
28154 5' -56.3 NC_005887.1 + 28642 0.69 0.428834
Target:  5'- gUCGA-CCGCGuccGCGcaGCGGGCGGCGa -3'
miRNA:   3'- gAGCUaGGUGC---UGCucUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 27338 0.66 0.617655
Target:  5'- gUCGAcugcgCCACGcgcagcggcGCGcAGACGAGCgucGGCAu -3'
miRNA:   3'- gAGCUa----GGUGC---------UGC-UCUGCUCG---CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.