Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 628 | 0.69 | 0.428834 |
Target: 5'- aUCGAagCCGCGAUGAaaGCGcGCGGCGa -3' miRNA: 3'- gAGCUa-GGUGCUGCUc-UGCuCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 913 | 0.66 | 0.625382 |
Target: 5'- uUCGAUCCGCGucgcgacccgcaucGCGAGugcccCGAGUgcuucGGCGa -3' miRNA: 3'- gAGCUAGGUGC--------------UGCUCu----GCUCG-----CCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 2239 | 0.68 | 0.509391 |
Target: 5'- gUCGGaagucgUCGCGACGAGcAUGGGCGcGCGu -3' miRNA: 3'- gAGCUa-----GGUGCUGCUC-UGCUCGC-CGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 7113 | 0.68 | 0.509391 |
Target: 5'- -gUGGUCUAacgaGGCGGGGCGGcgcuGCGGCGc -3' miRNA: 3'- gaGCUAGGUg---CUGCUCUGCU----CGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 8548 | 0.66 | 0.573715 |
Target: 5'- aCUCGAgCCACGuguCGucGcCGAGCGGUu -3' miRNA: 3'- -GAGCUaGGUGCu--GCu-CuGCUCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 8785 | 0.66 | 0.595622 |
Target: 5'- uUCGuggCCGCGACGAaGCGcuuaccgccGCGGCGg -3' miRNA: 3'- gAGCua-GGUGCUGCUcUGCu--------CGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 10753 | 0.7 | 0.391467 |
Target: 5'- aUCGGaCUggcGCGGCGGGuACGAGgGGCAg -3' miRNA: 3'- gAGCUaGG---UGCUGCUC-UGCUCgCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 13240 | 0.71 | 0.351206 |
Target: 5'- gCUCGAccgcucccgcugUCUgcgcgcgcgcggcaaGCGACGAGACGAGgccCGGCAc -3' miRNA: 3'- -GAGCU------------AGG---------------UGCUGCUCUGCUC---GCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 13383 | 0.68 | 0.498949 |
Target: 5'- gCUCGcgCUgaaggccggcGCGGCG-GACGucGGCGGCAa -3' miRNA: 3'- -GAGCuaGG----------UGCUGCuCUGC--UCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 13672 | 0.68 | 0.457203 |
Target: 5'- -gCGAUCagcggCGCGACGGGugggaucucgaccACGGGCGGCc -3' miRNA: 3'- gaGCUAG-----GUGCUGCUC-------------UGCUCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 14693 | 0.67 | 0.551999 |
Target: 5'- aUCGGgcucgUCGCGGCG-GGCGGGCcgGGCGc -3' miRNA: 3'- gAGCUa----GGUGCUGCuCUGCUCG--CCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 16039 | 0.66 | 0.628694 |
Target: 5'- -aCGAcaUCCuCGACGAacugcgacagcGGCGuGCGGCGc -3' miRNA: 3'- gaGCU--AGGuGCUGCU-----------CUGCuCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 17267 | 0.67 | 0.530539 |
Target: 5'- aUCGugCCG-GGCGAGACGucgGGCGGCGc -3' miRNA: 3'- gAGCuaGGUgCUGCUCUGC---UCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 19164 | 0.68 | 0.457203 |
Target: 5'- aCUCGGcaccgauuauUCCgugagcggcgcggGCGugGAGACaGGCGGCGc -3' miRNA: 3'- -GAGCU----------AGG-------------UGCugCUCUGcUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 20009 | 0.67 | 0.562829 |
Target: 5'- aCUCGAagcgCCACGGaggcuGAcacCGGGCGGCAg -3' miRNA: 3'- -GAGCUa---GGUGCUgcu--CU---GCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 23223 | 0.66 | 0.617655 |
Target: 5'- --aGggCCACGcCGAcggcacGCGAGCGGCGg -3' miRNA: 3'- gagCuaGGUGCuGCUc-----UGCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 23510 | 0.66 | 0.573715 |
Target: 5'- -cCGGUggaaGCGGCGGGaugGCGGGCGGCu -3' miRNA: 3'- gaGCUAgg--UGCUGCUC---UGCUCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 23631 | 0.67 | 0.519923 |
Target: 5'- uUCGcacugCCGgcCGGCGAuGCGGGCGGCGu -3' miRNA: 3'- gAGCua---GGU--GCUGCUcUGCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 23973 | 0.67 | 0.551999 |
Target: 5'- cCUCGGcCCACugcuCGAGcGCGAGgCGGCGc -3' miRNA: 3'- -GAGCUaGGUGcu--GCUC-UGCUC-GCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 24297 | 1.08 | 0.000736 |
Target: 5'- cCUCGAUCCACGACGAGACGAGCGGCAc -3' miRNA: 3'- -GAGCUAGGUGCUGCUCUGCUCGCCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home