Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 25501 | 0.71 | 0.33955 |
Target: 5'- gCUCGGaCgAUGGCGcGGCGGGUGGCGg -3' miRNA: 3'- -GAGCUaGgUGCUGCuCUGCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 25979 | 0.66 | 0.584649 |
Target: 5'- uUCGAcacuUCgGCGACGcGGuacagcuucACGGGCGGCGu -3' miRNA: 3'- gAGCU----AGgUGCUGC-UC---------UGCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 26443 | 0.66 | 0.606627 |
Target: 5'- -aCGAUCCGCGACuGGAac-GCuGGCAa -3' miRNA: 3'- gaGCUAGGUGCUGcUCUgcuCG-CCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 27338 | 0.66 | 0.617655 |
Target: 5'- gUCGAcugcgCCACGcgcagcggcGCGcAGACGAGCgucGGCAu -3' miRNA: 3'- gAGCUa----GGUGC---------UGC-UCUGCUCG---CCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 28642 | 0.69 | 0.428834 |
Target: 5'- gUCGA-CCGCGuccGCGcaGCGGGCGGCGa -3' miRNA: 3'- gAGCUaGGUGC---UGCucUGCUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 29109 | 0.66 | 0.572624 |
Target: 5'- gUCGGU-CGCGACGAGcCGGGUuucguacGGCGu -3' miRNA: 3'- gAGCUAgGUGCUGCUCuGCUCG-------CCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 29714 | 0.66 | 0.573715 |
Target: 5'- cCUCGcgCCGCG-CGugaguGACGA-CGGCGa -3' miRNA: 3'- -GAGCuaGGUGCuGCu----CUGCUcGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 29779 | 0.73 | 0.264538 |
Target: 5'- -gUGAUCCuGCGACGcgacGGCGAGUGGCu -3' miRNA: 3'- gaGCUAGG-UGCUGCu---CUGCUCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 29998 | 0.7 | 0.382462 |
Target: 5'- gUCGAUCCcgagaucguGCG-CGAGGCccGCGGCAu -3' miRNA: 3'- gAGCUAGG---------UGCuGCUCUGcuCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 30280 | 0.68 | 0.509391 |
Target: 5'- aUCGAaggCCGCGACGcGGCGuGGCuGGCc -3' miRNA: 3'- gAGCUa--GGUGCUGCuCUGC-UCG-CCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 31347 | 0.69 | 0.44829 |
Target: 5'- gUCGAgCU-CGACGAGGCGAucgacGCGGCc -3' miRNA: 3'- gAGCUaGGuGCUGCUCUGCU-----CGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 32281 | 0.66 | 0.584649 |
Target: 5'- -cCGGUCCAC-ACGGGGCGAucgucgggccaGcCGGCGc -3' miRNA: 3'- gaGCUAGGUGcUGCUCUGCU-----------C-GCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 32399 | 0.7 | 0.382462 |
Target: 5'- cCUCGAuacUCCuuucguCGACGuGGCcGGCGGCGa -3' miRNA: 3'- -GAGCU---AGGu-----GCUGCuCUGcUCGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 32527 | 0.66 | 0.573715 |
Target: 5'- aUCGAUCCGC-ACGccGCGcAGUGGCu -3' miRNA: 3'- gAGCUAGGUGcUGCucUGC-UCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 34352 | 0.68 | 0.458199 |
Target: 5'- -cCGG-CCACGGCugGAGACGAGCGccccGCGu -3' miRNA: 3'- gaGCUaGGUGCUG--CUCUGCUCGC----CGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 35134 | 0.67 | 0.541234 |
Target: 5'- aUCGGaaUCCgGCGccACG-GACGGGCGGCc -3' miRNA: 3'- gAGCU--AGG-UGC--UGCuCUGCUCGCCGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 35184 | 0.67 | 0.541234 |
Target: 5'- cCUCGAccuuuuUCCaACGGCGGGGCGAuucguugcGCaGCAg -3' miRNA: 3'- -GAGCU------AGG-UGCUGCUCUGCU--------CGcCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 36221 | 0.66 | 0.584649 |
Target: 5'- -aCGcgCCGCGACGAGGaaacCGGCGa -3' miRNA: 3'- gaGCuaGGUGCUGCUCUgcucGCCGU- -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 36335 | 0.66 | 0.573715 |
Target: 5'- aCUCGAUCCAgguauaggcCGACGAGGgggacagGAGCGcGUg -3' miRNA: 3'- -GAGCUAGGU---------GCUGCUCUg------CUCGC-CGu -5' |
|||||||
28154 | 5' | -56.3 | NC_005887.1 | + | 36353 | 0.66 | 0.628694 |
Target: 5'- aUCGG-CCAaccgGACGAGuCGAGCGaGUAc -3' miRNA: 3'- gAGCUaGGUg---CUGCUCuGCUCGC-CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home