miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28154 5' -56.3 NC_005887.1 + 40515 0.69 0.4385
Target:  5'- uUCGGcaUCCACcACGcGGCGcGCGGCAg -3'
miRNA:   3'- gAGCU--AGGUGcUGCuCUGCuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 41710 0.69 0.4385
Target:  5'- gCUC-AUCaa-GGCGAuGACGGGCGGCGa -3'
miRNA:   3'- -GAGcUAGgugCUGCU-CUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 13672 0.68 0.457203
Target:  5'- -gCGAUCagcggCGCGACGGGugggaucucgaccACGGGCGGCc -3'
miRNA:   3'- gaGCUAG-----GUGCUGCUC-------------UGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 19164 0.68 0.457203
Target:  5'- aCUCGGcaccgauuauUCCgugagcggcgcggGCGugGAGACaGGCGGCGc -3'
miRNA:   3'- -GAGCU----------AGG-------------UGCugCUCUGcUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 34352 0.68 0.458199
Target:  5'- -cCGG-CCACGGCugGAGACGAGCGccccGCGu -3'
miRNA:   3'- gaGCUaGGUGCUG--CUCUGCUCGC----CGU- -5'
28154 5' -56.3 NC_005887.1 + 13383 0.68 0.498949
Target:  5'- gCUCGcgCUgaaggccggcGCGGCG-GACGucGGCGGCAa -3'
miRNA:   3'- -GAGCuaGG----------UGCUGCuCUGC--UCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 8548 0.66 0.573715
Target:  5'- aCUCGAgCCACGuguCGucGcCGAGCGGUu -3'
miRNA:   3'- -GAGCUaGGUGCu--GCu-CuGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 20009 0.67 0.562829
Target:  5'- aCUCGAagcgCCACGGaggcuGAcacCGGGCGGCAg -3'
miRNA:   3'- -GAGCUa---GGUGCUgcu--CU---GCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 23631 0.67 0.519923
Target:  5'- uUCGcacugCCGgcCGGCGAuGCGGGCGGCGu -3'
miRNA:   3'- gAGCua---GGU--GCUGCUcUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 30280 0.68 0.509391
Target:  5'- aUCGAaggCCGCGACGcGGCGuGGCuGGCc -3'
miRNA:   3'- gAGCUa--GGUGCUGCuCUGC-UCG-CCGu -5'
28154 5' -56.3 NC_005887.1 + 31347 0.69 0.44829
Target:  5'- gUCGAgCU-CGACGAGGCGAucgacGCGGCc -3'
miRNA:   3'- gAGCUaGGuGCUGCUCUGCU-----CGCCGu -5'
28154 5' -56.3 NC_005887.1 + 28642 0.69 0.428834
Target:  5'- gUCGA-CCGCGuccGCGcaGCGGGCGGCGa -3'
miRNA:   3'- gAGCUaGGUGC---UGCucUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 32527 0.66 0.573715
Target:  5'- aUCGAUCCGC-ACGccGCGcAGUGGCu -3'
miRNA:   3'- gAGCUAGGUGcUGCucUGC-UCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 29714 0.66 0.573715
Target:  5'- cCUCGcgCCGCG-CGugaguGACGA-CGGCGa -3'
miRNA:   3'- -GAGCuaGGUGCuGCu----CUGCUcGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 23510 0.66 0.573715
Target:  5'- -cCGGUggaaGCGGCGGGaugGCGGGCGGCu -3'
miRNA:   3'- gaGCUAgg--UGCUGCUC---UGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 36221 0.66 0.584649
Target:  5'- -aCGcgCCGCGACGAGGaaacCGGCGa -3'
miRNA:   3'- gaGCuaGGUGCUGCUCUgcucGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 8785 0.66 0.595622
Target:  5'- uUCGuggCCGCGACGAaGCGcuuaccgccGCGGCGg -3'
miRNA:   3'- gAGCua-GGUGCUGCUcUGCu--------CGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 26443 0.66 0.606627
Target:  5'- -aCGAUCCGCGACuGGAac-GCuGGCAa -3'
miRNA:   3'- gaGCUAGGUGCUGcUCUgcuCG-CCGU- -5'
28154 5' -56.3 NC_005887.1 + 16039 0.66 0.628694
Target:  5'- -aCGAcaUCCuCGACGAacugcgacagcGGCGuGCGGCGc -3'
miRNA:   3'- gaGCU--AGGuGCUGCU-----------CUGCuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29779 0.73 0.264538
Target:  5'- -gUGAUCCuGCGACGcgacGGCGAGUGGCu -3'
miRNA:   3'- gaGCUAGG-UGCUGCu---CUGCUCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.