miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28154 5' -56.3 NC_005887.1 + 36353 0.66 0.628694
Target:  5'- aUCGG-CCAaccgGACGAGuCGAGCGaGUAc -3'
miRNA:   3'- gAGCUaGGUg---CUGCUCuGCUCGC-CGU- -5'
28154 5' -56.3 NC_005887.1 + 30280 0.68 0.509391
Target:  5'- aUCGAaggCCGCGACGcGGCGuGGCuGGCc -3'
miRNA:   3'- gAGCUa--GGUGCUGCuCUGC-UCG-CCGu -5'
28154 5' -56.3 NC_005887.1 + 8548 0.66 0.573715
Target:  5'- aCUCGAgCCACGuguCGucGcCGAGCGGUu -3'
miRNA:   3'- -GAGCUaGGUGCu--GCu-CuGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 32527 0.66 0.573715
Target:  5'- aUCGAUCCGC-ACGccGCGcAGUGGCu -3'
miRNA:   3'- gAGCUAGGUGcUGCucUGC-UCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 23510 0.66 0.573715
Target:  5'- -cCGGUggaaGCGGCGGGaugGCGGGCGGCu -3'
miRNA:   3'- gaGCUAgg--UGCUGCUC---UGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 36221 0.66 0.584649
Target:  5'- -aCGcgCCGCGACGAGGaaacCGGCGa -3'
miRNA:   3'- gaGCuaGGUGCUGCUCUgcucGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29779 0.73 0.264538
Target:  5'- -gUGAUCCuGCGACGcgacGGCGAGUGGCu -3'
miRNA:   3'- gaGCUAGG-UGCUGCu---CUGCUCGCCGu -5'
28154 5' -56.3 NC_005887.1 + 28642 0.69 0.428834
Target:  5'- gUCGA-CCGCGuccGCGcaGCGGGCGGCGa -3'
miRNA:   3'- gAGCUaGGUGC---UGCucUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 23631 0.67 0.519923
Target:  5'- uUCGcacugCCGgcCGGCGAuGCGGGCGGCGu -3'
miRNA:   3'- gAGCua---GGU--GCUGCUcUGCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29714 0.66 0.573715
Target:  5'- cCUCGcgCCGCG-CGugaguGACGA-CGGCGa -3'
miRNA:   3'- -GAGCuaGGUGCuGCu----CUGCUcGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 16039 0.66 0.628694
Target:  5'- -aCGAcaUCCuCGACGAacugcgacagcGGCGuGCGGCGc -3'
miRNA:   3'- gaGCU--AGGuGCUGCU-----------CUGCuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 29998 0.7 0.382462
Target:  5'- gUCGAUCCcgagaucguGCG-CGAGGCccGCGGCAu -3'
miRNA:   3'- gAGCUAGG---------UGCuGCUCUGcuCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 26443 0.66 0.606627
Target:  5'- -aCGAUCCGCGACuGGAac-GCuGGCAa -3'
miRNA:   3'- gaGCUAGGUGCUGcUCUgcuCG-CCGU- -5'
28154 5' -56.3 NC_005887.1 + 20009 0.67 0.562829
Target:  5'- aCUCGAagcgCCACGGaggcuGAcacCGGGCGGCAg -3'
miRNA:   3'- -GAGCUa---GGUGCUgcu--CU---GCUCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 13240 0.71 0.351206
Target:  5'- gCUCGAccgcucccgcugUCUgcgcgcgcgcggcaaGCGACGAGACGAGgccCGGCAc -3'
miRNA:   3'- -GAGCU------------AGG---------------UGCUGCUCUGCUC---GCCGU- -5'
28154 5' -56.3 NC_005887.1 + 8785 0.66 0.595622
Target:  5'- uUCGuggCCGCGACGAaGCGcuuaccgccGCGGCGg -3'
miRNA:   3'- gAGCua-GGUGCUGCUcUGCu--------CGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 31347 0.69 0.44829
Target:  5'- gUCGAgCU-CGACGAGGCGAucgacGCGGCc -3'
miRNA:   3'- gAGCUaGGuGCUGCUCUGCU-----CGCCGu -5'
28154 5' -56.3 NC_005887.1 + 17267 0.67 0.530539
Target:  5'- aUCGugCCG-GGCGAGACGucgGGCGGCGc -3'
miRNA:   3'- gAGCuaGGUgCUGCUCUGC---UCGCCGU- -5'
28154 5' -56.3 NC_005887.1 + 2239 0.68 0.509391
Target:  5'- gUCGGaagucgUCGCGACGAGcAUGGGCGcGCGu -3'
miRNA:   3'- gAGCUa-----GGUGCUGCUC-UGCUCGC-CGU- -5'
28154 5' -56.3 NC_005887.1 + 7113 0.68 0.509391
Target:  5'- -gUGGUCUAacgaGGCGGGGCGGcgcuGCGGCGc -3'
miRNA:   3'- gaGCUAGGUg---CUGCUCUGCU----CGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.