miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28156 3' -59.6 NC_005887.1 + 3792 0.66 0.412767
Target:  5'- ---cGUCCAGCuugcgcggauCGCGGUCGGCGc--- -3'
miRNA:   3'- guaaCAGGUCG----------GCGCCGGCCGUagga -5'
28156 3' -59.6 NC_005887.1 + 9752 0.66 0.412767
Target:  5'- ---aGUCauCGGuCUGCuGGUCGGCGUCCUu -3'
miRNA:   3'- guaaCAG--GUC-GGCG-CCGGCCGUAGGA- -5'
28156 3' -59.6 NC_005887.1 + 16389 0.66 0.412767
Target:  5'- ---aGUUC-GCgGCgaccucgaacaGGCCGGCGUCCUg -3'
miRNA:   3'- guaaCAGGuCGgCG-----------CCGGCCGUAGGA- -5'
28156 3' -59.6 NC_005887.1 + 40263 0.66 0.394354
Target:  5'- --aUGUUCGugcuGCCGCuGGCCGGCAagUCg- -3'
miRNA:   3'- guaACAGGU----CGGCG-CCGGCCGU--AGga -5'
28156 3' -59.6 NC_005887.1 + 10219 0.67 0.359164
Target:  5'- --aUG-CCAGCCGUagacgucgcuccGGCCGGCuUCUUc -3'
miRNA:   3'- guaACaGGUCGGCG------------CCGGCCGuAGGA- -5'
28156 3' -59.6 NC_005887.1 + 26554 0.67 0.359164
Target:  5'- ---cGUCgaGGaaGCGGCCGGCAUgCCc -3'
miRNA:   3'- guaaCAGg-UCggCGCCGGCCGUA-GGa -5'
28156 3' -59.6 NC_005887.1 + 936 0.67 0.334248
Target:  5'- ---cGUCCGGCgGCgcgGGCCacGCGUCCa -3'
miRNA:   3'- guaaCAGGUCGgCG---CCGGc-CGUAGGa -5'
28156 3' -59.6 NC_005887.1 + 3711 0.67 0.326228
Target:  5'- ---cGUCgAGCCGCGcGCCGaccGCgAUCCg -3'
miRNA:   3'- guaaCAGgUCGGCGC-CGGC---CG-UAGGa -5'
28156 3' -59.6 NC_005887.1 + 35407 0.67 0.326228
Target:  5'- ---cGUgaAGCuCGUGGCCGGCcgCCg -3'
miRNA:   3'- guaaCAggUCG-GCGCCGGCCGuaGGa -5'
28156 3' -59.6 NC_005887.1 + 17135 0.68 0.295587
Target:  5'- ---gGUCgAGCaGCGGCaugaCGGCGUCCg -3'
miRNA:   3'- guaaCAGgUCGgCGCCG----GCCGUAGGa -5'
28156 3' -59.6 NC_005887.1 + 16264 0.68 0.295587
Target:  5'- --gUGUCCGGUCGCaGCgCGGCcUCUUc -3'
miRNA:   3'- guaACAGGUCGGCGcCG-GCCGuAGGA- -5'
28156 3' -59.6 NC_005887.1 + 24736 0.68 0.295587
Target:  5'- --aUG-CCGGCCGCGGCUGGaCAa--- -3'
miRNA:   3'- guaACaGGUCGGCGCCGGCC-GUagga -5'
28156 3' -59.6 NC_005887.1 + 34684 0.68 0.274109
Target:  5'- aCGUUGUCgAGCagcaGCGGgCGGCcgUCg -3'
miRNA:   3'- -GUAACAGgUCGg---CGCCgGCCGuaGGa -5'
28156 3' -59.6 NC_005887.1 + 26284 0.69 0.253899
Target:  5'- cCcgUGcgCCAGCUGCaGGCCGGCcaccgCCg -3'
miRNA:   3'- -GuaACa-GGUCGGCG-CCGGCCGua---GGa -5'
28156 3' -59.6 NC_005887.1 + 16010 0.69 0.253247
Target:  5'- ---cGUgCGGCgCGUGGCCGGCGcaucgauUCCg -3'
miRNA:   3'- guaaCAgGUCG-GCGCCGGCCGU-------AGGa -5'
28156 3' -59.6 NC_005887.1 + 4378 0.69 0.234929
Target:  5'- --aUGUCCGGCaGCuGGCCGGCcUCg- -3'
miRNA:   3'- guaACAGGUCGgCG-CCGGCCGuAGga -5'
28156 3' -59.6 NC_005887.1 + 2251 0.7 0.205969
Target:  5'- --cUGcCCGaucaCCGCGGCCGGCGUCa- -3'
miRNA:   3'- guaACaGGUc---GGCGCCGGCCGUAGga -5'
28156 3' -59.6 NC_005887.1 + 3149 0.7 0.205969
Target:  5'- ----aUgCGGCCGUGGUCGGCGUUCa -3'
miRNA:   3'- guaacAgGUCGGCGCCGGCCGUAGGa -5'
28156 3' -59.6 NC_005887.1 + 15573 0.71 0.190115
Target:  5'- ---cGUCCGGaaaC-UGGCCGGCGUCCa -3'
miRNA:   3'- guaaCAGGUCg--GcGCCGGCCGUAGGa -5'
28156 3' -59.6 NC_005887.1 + 26326 0.72 0.144791
Target:  5'- ---gGUUCAgGCCGUGGCCGGCGcuggCCg -3'
miRNA:   3'- guaaCAGGU-CGGCGCCGGCCGUa---GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.