miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 32833 0.67 0.569327
Target:  5'- gCGCaCGAGCcggCUGCaugGCGCgcgcCGGCGc -3'
miRNA:   3'- -GCG-GCUCGua-GACGa--UGUGaa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 34292 0.66 0.658932
Target:  5'- uCGCCGuGCggCUGaCUGCGgg-CGGCa -3'
miRNA:   3'- -GCGGCuCGuaGAC-GAUGUgaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 35546 0.73 0.271579
Target:  5'- gCGCCGAugGUCUGCUcgACAUgugCGGCGa -3'
miRNA:   3'- -GCGGCUcgUAGACGA--UGUGaa-GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 37160 0.68 0.493482
Target:  5'- uCGCCGAGgcUgUGCUcgccCGCUUCGGUGc -3'
miRNA:   3'- -GCGGCUCguAgACGAu---GUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 38599 0.72 0.316572
Target:  5'- uGUCGAGCGcgaUGUaGCGCUUCGGCc -3'
miRNA:   3'- gCGGCUCGUag-ACGaUGUGAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 38893 0.71 0.331945
Target:  5'- -cCCGAGCGguagucauggcuuUgUGCUGCGCguugUCGGCGa -3'
miRNA:   3'- gcGGCUCGU-------------AgACGAUGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 40162 0.71 0.35819
Target:  5'- uCGCCGcGUGUgaGCUGCGCgaCGGCa -3'
miRNA:   3'- -GCGGCuCGUAgaCGAUGUGaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40451 0.68 0.536348
Target:  5'- uGCCGGGCAUCacgauuuccucGC-GCGCgaCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGa----------CGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 40609 0.66 0.614001
Target:  5'- uCGaCGAGCGUgUGUggccGCACaUCGGCa -3'
miRNA:   3'- -GCgGCUCGUAgACGa---UGUGaAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40947 0.8 0.084068
Target:  5'- aCGCCGAGCGcaUGCUcgacCGCUUCGGCGc -3'
miRNA:   3'- -GCGGCUCGUagACGAu---GUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41019 0.68 0.493482
Target:  5'- gCGCCGaAGCgGUCgaGCaUGCGC-UCGGCGu -3'
miRNA:   3'- -GCGGC-UCG-UAGa-CG-AUGUGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41413 0.67 0.584895
Target:  5'- uGCCGAGCAggucgaauUCUuccagcgccucguggGCUauGCGCUgcUCGGCa -3'
miRNA:   3'- gCGGCUCGU--------AGA---------------CGA--UGUGA--AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 41441 0.71 0.375877
Target:  5'- aCGUCGcGCAcggUCUGCUcgaACGCUUccCGGCGg -3'
miRNA:   3'- -GCGGCuCGU---AGACGA---UGUGAA--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41626 0.73 0.257766
Target:  5'- gGCCcguGAGgAUCUGCUGCGuCUgcgCGGCGc -3'
miRNA:   3'- gCGG---CUCgUAGACGAUGU-GAa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41999 0.66 0.614001
Target:  5'- aCGCCGGGCAgcucagCUGCgagccgcucaGCACgugCGGgGu -3'
miRNA:   3'- -GCGGCUCGUa-----GACGa---------UGUGaa-GCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.