miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 18223 0.73 0.257766
Target:  5'- uGCCGAGCA---GCUucgGCACgacgUCGGCGg -3'
miRNA:   3'- gCGGCUCGUagaCGA---UGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18490 0.7 0.384026
Target:  5'- gCGCCGAucaGCGUCgUGCUgacgacgGCGCcgCGGCGu -3'
miRNA:   3'- -GCGGCU---CGUAG-ACGA-------UGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18997 0.66 0.636475
Target:  5'- cCGCCGAcgGCcgCUGCgaga-UUCGGUGa -3'
miRNA:   3'- -GCGGCU--CGuaGACGaugugAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 19423 0.72 0.316572
Target:  5'- uCGCCGcacGCGUCUGCUGCGCgagcaUGGUc -3'
miRNA:   3'- -GCGGCu--CGUAGACGAUGUGaa---GCCGc -5'
28158 5' -55.2 NC_005887.1 + 21403 0.67 0.584895
Target:  5'- cCGCCG-GCAUucgguaacaccacacCUGCcGCugUuUCGGCGa -3'
miRNA:   3'- -GCGGCuCGUA---------------GACGaUGugA-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 21575 0.67 0.591593
Target:  5'- aGCCG-GCGUC-GUUGCGCcgauugcCGGCGg -3'
miRNA:   3'- gCGGCuCGUAGaCGAUGUGaa-----GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 24547 0.71 0.36696
Target:  5'- uGCCGGGCAUCgacgACACgaUCGGCc -3'
miRNA:   3'- gCGGCUCGUAGacgaUGUGa-AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 25001 0.79 0.112365
Target:  5'- uGCCGAGCGUCaGCU-CGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGaCGAuGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 25967 0.9 0.017768
Target:  5'- aCGCCGAGCAUCUuCgACACUUCGGCGa -3'
miRNA:   3'- -GCGGCUCGUAGAcGaUGUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 26007 0.71 0.332769
Target:  5'- uGCCGGGCcaccgucuacaAUCUGgUGCGCgaCGGCa -3'
miRNA:   3'- gCGGCUCG-----------UAGACgAUGUGaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 26109 0.66 0.636475
Target:  5'- gCGUCGAGCAggaugucCUGCacggcGCGCUUCGuuucGCGg -3'
miRNA:   3'- -GCGGCUCGUa------GACGa----UGUGAAGC----CGC- -5'
28158 5' -55.2 NC_005887.1 + 27422 0.66 0.658932
Target:  5'- uGCCGAcGCucGUCUGCgcgcCGCUgcgcgUGGCGc -3'
miRNA:   3'- gCGGCU-CG--UAGACGau--GUGAa----GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28270 0.66 0.647711
Target:  5'- cCGCCGAGacgC-GCgGCGCUgaugCGGCGc -3'
miRNA:   3'- -GCGGCUCguaGaCGaUGUGAa---GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28335 0.68 0.536348
Target:  5'- uGUCG-GCGUCUGCgccgGCGCggcaUUGGCu -3'
miRNA:   3'- gCGGCuCGUAGACGa---UGUGa---AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 28472 0.67 0.590476
Target:  5'- uGCCGGGCcgCUucaGCUcgacgaaguagacGCGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGuaGA---CGA-------------UGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28485 0.69 0.462388
Target:  5'- aGCaCGAGCGcCUGCgcGCGC-UCGGCu -3'
miRNA:   3'- gCG-GCUCGUaGACGa-UGUGaAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 30367 0.66 0.658932
Target:  5'- uGCCGAGC-UCgGUguacCGC-UCGGCGu -3'
miRNA:   3'- gCGGCUCGuAGaCGau--GUGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 30995 0.71 0.36696
Target:  5'- cCGCCGAGCGcgCUG-UGCACaa-GGCGa -3'
miRNA:   3'- -GCGGCUCGUa-GACgAUGUGaagCCGC- -5'
28158 5' -55.2 NC_005887.1 + 31904 0.66 0.614001
Target:  5'- aGCCGgucaGGCAUgCUGCUGCAagaUCcgGGCGu -3'
miRNA:   3'- gCGGC----UCGUA-GACGAUGUga-AG--CCGC- -5'
28158 5' -55.2 NC_005887.1 + 32395 0.68 0.501936
Target:  5'- uCGCCG-GCAUCgGCgugugguccuacGCACUgCGGCGc -3'
miRNA:   3'- -GCGGCuCGUAGaCGa-----------UGUGAaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.