miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 37160 0.68 0.493482
Target:  5'- uCGCCGAGgcUgUGCUcgccCGCUUCGGUGc -3'
miRNA:   3'- -GCGGCUCguAgACGAu---GUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41019 0.68 0.493482
Target:  5'- gCGCCGaAGCgGUCgaGCaUGCGC-UCGGCGu -3'
miRNA:   3'- -GCGGC-UCG-UAGa-CG-AUGUGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 4323 0.68 0.493482
Target:  5'- gGCCGAGCAguucagaCUGCgugcgGCcgaGCgUCGGCGc -3'
miRNA:   3'- gCGGCUCGUa------GACGa----UG---UGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15156 0.68 0.493482
Target:  5'- -cUCGGGCAucaUCUGCgACACgcCGGCGg -3'
miRNA:   3'- gcGGCUCGU---AGACGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15931 0.68 0.493482
Target:  5'- uGCUGGuGCGcCUGCUGCGCgcgGGCGu -3'
miRNA:   3'- gCGGCU-CGUaGACGAUGUGaagCCGC- -5'
28158 5' -55.2 NC_005887.1 + 8518 0.69 0.483007
Target:  5'- gCGCCGGGCGcUCgaucGCguugACGCggaucgcUCGGCGa -3'
miRNA:   3'- -GCGGCUCGU-AGa---CGa---UGUGa------AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 16336 0.69 0.483007
Target:  5'- uCGUCGA---UCUGCUGCAUcagcUCGGCGa -3'
miRNA:   3'- -GCGGCUcguAGACGAUGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 17363 0.69 0.462388
Target:  5'- gCGCCGAaccgGCGUUUGC-GCGCg-CGGCGc -3'
miRNA:   3'- -GCGGCU----CGUAGACGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28485 0.69 0.462388
Target:  5'- aGCaCGAGCGcCUGCgcGCGC-UCGGCu -3'
miRNA:   3'- gCG-GCUCGUaGACGa-UGUGaAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 32395 0.68 0.501936
Target:  5'- uCGCCG-GCAUCgGCgugugguccuacGCACUgCGGCGc -3'
miRNA:   3'- -GCGGCuCGUAGaCGa-----------UGUGAaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 8650 0.68 0.524419
Target:  5'- uCGCC-AGCGUCgaacgaaaccUGCUGCGgugcugcCUUCGGCa -3'
miRNA:   3'- -GCGGcUCGUAG----------ACGAUGU-------GAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40451 0.68 0.536348
Target:  5'- uGCCGGGCAUCacgauuuccucGC-GCGCgaCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGa----------CGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 1548 0.66 0.647711
Target:  5'- cCGCgCGAGCG-CcGC-ACGCcgUCGGCGu -3'
miRNA:   3'- -GCG-GCUCGUaGaCGaUGUGa-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28270 0.66 0.647711
Target:  5'- cCGCCGAGacgC-GCgGCGCUgaugCGGCGc -3'
miRNA:   3'- -GCGGCUCguaGaCGaUGUGAa---GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18997 0.66 0.636475
Target:  5'- cCGCCGAcgGCcgCUGCgaga-UUCGGUGa -3'
miRNA:   3'- -GCGGCU--CGuaGACGaugugAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41999 0.66 0.614001
Target:  5'- aCGCCGGGCAgcucagCUGCgagccgcucaGCACgugCGGgGu -3'
miRNA:   3'- -GCGGCUCGUa-----GACGa---------UGUGaa-GCCgC- -5'
28158 5' -55.2 NC_005887.1 + 21575 0.67 0.591593
Target:  5'- aGCCG-GCGUC-GUUGCGCcgauugcCGGCGg -3'
miRNA:   3'- gCGGCuCGUAGaCGAUGUGaa-----GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 5722 0.67 0.580438
Target:  5'- uCGCCGGuGCcgCaUGCUuCGCUUCGaGCu -3'
miRNA:   3'- -GCGGCU-CGuaG-ACGAuGUGAAGC-CGc -5'
28158 5' -55.2 NC_005887.1 + 32833 0.67 0.569327
Target:  5'- gCGCaCGAGCcggCUGCaugGCGCgcgcCGGCGc -3'
miRNA:   3'- -GCG-GCUCGua-GACGa--UGUGaa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15077 0.67 0.547274
Target:  5'- aGCgCGAGCAUCaGCUcgggcgGCACgccugCGGCc -3'
miRNA:   3'- gCG-GCUCGUAGaCGA------UGUGaa---GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.