miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 25967 0.9 0.017768
Target:  5'- aCGCCGAGCAUCUuCgACACUUCGGCGa -3'
miRNA:   3'- -GCGGCUCGUAGAcGaUGUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41413 0.67 0.584895
Target:  5'- uGCCGAGCAggucgaauUCUuccagcgccucguggGCUauGCGCUgcUCGGCa -3'
miRNA:   3'- gCGGCUCGU--------AGA---------------CGA--UGUGA--AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 28472 0.67 0.590476
Target:  5'- uGCCGGGCcgCUucaGCUcgacgaaguagacGCGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGuaGA---CGA-------------UGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 31904 0.66 0.614001
Target:  5'- aGCCGgucaGGCAUgCUGCUGCAagaUCcgGGCGu -3'
miRNA:   3'- gCGGC----UCGUA-GACGAUGUga-AG--CCGC- -5'
28158 5' -55.2 NC_005887.1 + 2432 0.66 0.614001
Target:  5'- gCGCCGAcgaauGaCAcCUcGCUGCGCUaCGGCGc -3'
miRNA:   3'- -GCGGCU-----C-GUaGA-CGAUGUGAaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 40609 0.66 0.614001
Target:  5'- uCGaCGAGCGUgUGUggccGCACaUCGGCa -3'
miRNA:   3'- -GCgGCUCGUAgACGa---UGUGaAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 26109 0.66 0.636475
Target:  5'- gCGUCGAGCAggaugucCUGCacggcGCGCUUCGuuucGCGg -3'
miRNA:   3'- -GCGGCUCGUa------GACGa----UGUGAAGC----CGC- -5'
28158 5' -55.2 NC_005887.1 + 30367 0.66 0.658932
Target:  5'- uGCCGAGC-UCgGUguacCGC-UCGGCGu -3'
miRNA:   3'- gCGGCUCGuAGaCGau--GUGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 34292 0.66 0.658932
Target:  5'- uCGCCGuGCggCUGaCUGCGgg-CGGCa -3'
miRNA:   3'- -GCGGCuCGuaGAC-GAUGUgaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 21403 0.67 0.584895
Target:  5'- cCGCCG-GCAUucgguaacaccacacCUGCcGCugUuUCGGCGa -3'
miRNA:   3'- -GCGGCuCGUA---------------GACGaUGugA-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 28335 0.68 0.536348
Target:  5'- uGUCG-GCGUCUGCgccgGCGCggcaUUGGCu -3'
miRNA:   3'- gCGGCuCGUAGACGa---UGUGa---AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 3612 0.69 0.483007
Target:  5'- gCGCCaGGCcgC-GCaGCGCUUCGGCc -3'
miRNA:   3'- -GCGGcUCGuaGaCGaUGUGAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40947 0.8 0.084068
Target:  5'- aCGCCGAGCGcaUGCUcgacCGCUUCGGCGc -3'
miRNA:   3'- -GCGGCUCGUagACGAu---GUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 25001 0.79 0.112365
Target:  5'- uGCCGAGCGUCaGCU-CGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGaCGAuGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41626 0.73 0.257766
Target:  5'- gGCCcguGAGgAUCUGCUGCGuCUgcgCGGCGc -3'
miRNA:   3'- gCGG---CUCgUAGACGAUGU-GAa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 35546 0.73 0.271579
Target:  5'- gCGCCGAugGUCUGCUcgACAUgugCGGCGa -3'
miRNA:   3'- -GCGGCUcgUAGACGA--UGUGaa-GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 38599 0.72 0.316572
Target:  5'- uGUCGAGCGcgaUGUaGCGCUUCGGCc -3'
miRNA:   3'- gCGGCUCGUag-ACGaUGUGAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40162 0.71 0.35819
Target:  5'- uCGCCGcGUGUgaGCUGCGCgaCGGCa -3'
miRNA:   3'- -GCGGCuCGUAgaCGAUGUGaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 17307 0.69 0.472641
Target:  5'- aCGCCGGuucggcGCAccgCgUGCUGCACUUCcGCGa -3'
miRNA:   3'- -GCGGCU------CGUa--G-ACGAUGUGAAGcCGC- -5'
28158 5' -55.2 NC_005887.1 + 14365 0.69 0.483007
Target:  5'- uGCCGGGCAcCUGUUcgaguCGCcgcUCGGCGc -3'
miRNA:   3'- gCGGCUCGUaGACGAu----GUGa--AGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.