miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 1548 0.66 0.647711
Target:  5'- cCGCgCGAGCG-CcGC-ACGCcgUCGGCGu -3'
miRNA:   3'- -GCG-GCUCGUaGaCGaUGUGa-AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 2432 0.66 0.614001
Target:  5'- gCGCCGAcgaauGaCAcCUcGCUGCGCUaCGGCGc -3'
miRNA:   3'- -GCGGCU-----C-GUaGA-CGAUGUGAaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 3092 0.69 0.442241
Target:  5'- gGCCGAGCAUg-GCUuuGCccgCGGCGc -3'
miRNA:   3'- gCGGCUCGUAgaCGAugUGaa-GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 3612 0.69 0.483007
Target:  5'- gCGCCaGGCcgC-GCaGCGCUUCGGCc -3'
miRNA:   3'- -GCGGcUCGuaGaCGaUGUGAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 4323 0.68 0.493482
Target:  5'- gGCCGAGCAguucagaCUGCgugcgGCcgaGCgUCGGCGc -3'
miRNA:   3'- gCGGCUCGUa------GACGa----UG---UGaAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 4668 0.78 0.117988
Target:  5'- gCGgCGAGCAUCUGUUGCAuCUgcgcggccugcgccUCGGCGg -3'
miRNA:   3'- -GCgGCUCGUAGACGAUGU-GA--------------AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 5722 0.67 0.580438
Target:  5'- uCGCCGGuGCcgCaUGCUuCGCUUCGaGCu -3'
miRNA:   3'- -GCGGCU-CGuaG-ACGAuGUGAAGC-CGc -5'
28158 5' -55.2 NC_005887.1 + 8518 0.69 0.483007
Target:  5'- gCGCCGGGCGcUCgaucGCguugACGCggaucgcUCGGCGa -3'
miRNA:   3'- -GCGGCUCGU-AGa---CGa---UGUGa------AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 8650 0.68 0.524419
Target:  5'- uCGCC-AGCGUCgaacgaaaccUGCUGCGgugcugcCUUCGGCa -3'
miRNA:   3'- -GCGGcUCGUAG----------ACGAUGU-------GAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 9783 0.72 0.305592
Target:  5'- uGCCGGGCGUugagCUGCUGCACgaucgcugagucaUCGGUc -3'
miRNA:   3'- gCGGCUCGUA----GACGAUGUGa------------AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 12659 0.76 0.16249
Target:  5'- aCGCCGAGCGUC-GCgGC-CgggUCGGCGg -3'
miRNA:   3'- -GCGGCUCGUAGaCGaUGuGa--AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 14365 0.69 0.483007
Target:  5'- uGCCGGGCAcCUGUUcgaguCGCcgcUCGGCGc -3'
miRNA:   3'- gCGGCUCGUaGACGAu----GUGa--AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15077 0.67 0.547274
Target:  5'- aGCgCGAGCAUCaGCUcgggcgGCACgccugCGGCc -3'
miRNA:   3'- gCG-GCUCGUAGaCGA------UGUGaa---GCCGc -5'
28158 5' -55.2 NC_005887.1 + 15156 0.68 0.493482
Target:  5'- -cUCGGGCAucaUCUGCgACACgcCGGCGg -3'
miRNA:   3'- gcGGCUCGU---AGACGaUGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15661 0.7 0.422599
Target:  5'- aCGcCCGuGCG-CUGCgucucaGCUUCGGCGa -3'
miRNA:   3'- -GC-GGCuCGUaGACGaug---UGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15718 0.69 0.462388
Target:  5'- uCGgCGcGCAUCUGCgACACggcgcccugaUCGGCGa -3'
miRNA:   3'- -GCgGCuCGUAGACGaUGUGa---------AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15931 0.68 0.493482
Target:  5'- uGCUGGuGCGcCUGCUGCGCgcgGGCGu -3'
miRNA:   3'- gCGGCU-CGUaGACGAUGUGaagCCGC- -5'
28158 5' -55.2 NC_005887.1 + 16336 0.69 0.483007
Target:  5'- uCGUCGA---UCUGCUGCAUcagcUCGGCGa -3'
miRNA:   3'- -GCGGCUcguAGACGAUGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 17307 0.69 0.472641
Target:  5'- aCGCCGGuucggcGCAccgCgUGCUGCACUUCcGCGa -3'
miRNA:   3'- -GCGGCU------CGUa--G-ACGAUGUGAAGcCGC- -5'
28158 5' -55.2 NC_005887.1 + 17363 0.69 0.462388
Target:  5'- gCGCCGAaccgGCGUUUGC-GCGCg-CGGCGc -3'
miRNA:   3'- -GCGGCU----CGUAGACGaUGUGaaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.