miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28158 5' -55.2 NC_005887.1 + 25967 0.9 0.017768
Target:  5'- aCGCCGAGCAUCUuCgACACUUCGGCGa -3'
miRNA:   3'- -GCGGCUCGUAGAcGaUGUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 40947 0.8 0.084068
Target:  5'- aCGCCGAGCGcaUGCUcgacCGCUUCGGCGc -3'
miRNA:   3'- -GCGGCUCGUagACGAu---GUGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 25001 0.79 0.112365
Target:  5'- uGCCGAGCGUCaGCU-CGCgcCGGCGg -3'
miRNA:   3'- gCGGCUCGUAGaCGAuGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 4668 0.78 0.117988
Target:  5'- gCGgCGAGCAUCUGUUGCAuCUgcgcggccugcgccUCGGCGg -3'
miRNA:   3'- -GCgGCUCGUAGACGAUGU-GA--------------AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 12659 0.76 0.16249
Target:  5'- aCGCCGAGCGUC-GCgGC-CgggUCGGCGg -3'
miRNA:   3'- -GCGGCUCGUAGaCGaUGuGa--AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 41626 0.73 0.257766
Target:  5'- gGCCcguGAGgAUCUGCUGCGuCUgcgCGGCGc -3'
miRNA:   3'- gCGG---CUCgUAGACGAUGU-GAa--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18223 0.73 0.257766
Target:  5'- uGCCGAGCA---GCUucgGCACgacgUCGGCGg -3'
miRNA:   3'- gCGGCUCGUagaCGA---UGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 35546 0.73 0.271579
Target:  5'- gCGCCGAugGUCUGCUcgACAUgugCGGCGa -3'
miRNA:   3'- -GCGGCUcgUAGACGA--UGUGaa-GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 9783 0.72 0.305592
Target:  5'- uGCCGGGCGUugagCUGCUGCACgaucgcugagucaUCGGUc -3'
miRNA:   3'- gCGGCUCGUA----GACGAUGUGa------------AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 38599 0.72 0.316572
Target:  5'- uGUCGAGCGcgaUGUaGCGCUUCGGCc -3'
miRNA:   3'- gCGGCUCGUag-ACGaUGUGAAGCCGc -5'
28158 5' -55.2 NC_005887.1 + 19423 0.72 0.316572
Target:  5'- uCGCCGcacGCGUCUGCUGCGCgagcaUGGUc -3'
miRNA:   3'- -GCGGCu--CGUAGACGAUGUGaa---GCCGc -5'
28158 5' -55.2 NC_005887.1 + 38893 0.71 0.331945
Target:  5'- -cCCGAGCGguagucauggcuuUgUGCUGCGCguugUCGGCGa -3'
miRNA:   3'- gcGGCUCGU-------------AgACGAUGUGa---AGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 26007 0.71 0.332769
Target:  5'- uGCCGGGCcaccgucuacaAUCUGgUGCGCgaCGGCa -3'
miRNA:   3'- gCGGCUCG-----------UAGACgAUGUGaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 40162 0.71 0.35819
Target:  5'- uCGCCGcGUGUgaGCUGCGCgaCGGCa -3'
miRNA:   3'- -GCGGCuCGUAgaCGAUGUGaaGCCGc -5'
28158 5' -55.2 NC_005887.1 + 30995 0.71 0.36696
Target:  5'- cCGCCGAGCGcgCUG-UGCACaa-GGCGa -3'
miRNA:   3'- -GCGGCUCGUa-GACgAUGUGaagCCGC- -5'
28158 5' -55.2 NC_005887.1 + 24547 0.71 0.36696
Target:  5'- uGCCGGGCAUCgacgACACgaUCGGCc -3'
miRNA:   3'- gCGGCUCGUAGacgaUGUGa-AGCCGc -5'
28158 5' -55.2 NC_005887.1 + 41441 0.71 0.375877
Target:  5'- aCGUCGcGCAcggUCUGCUcgaACGCUUccCGGCGg -3'
miRNA:   3'- -GCGGCuCGU---AGACGA---UGUGAA--GCCGC- -5'
28158 5' -55.2 NC_005887.1 + 18490 0.7 0.384026
Target:  5'- gCGCCGAucaGCGUCgUGCUgacgacgGCGCcgCGGCGu -3'
miRNA:   3'- -GCGGCU---CGUAG-ACGA-------UGUGaaGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 15661 0.7 0.422599
Target:  5'- aCGcCCGuGCG-CUGCgucucaGCUUCGGCGa -3'
miRNA:   3'- -GC-GGCuCGUaGACGaug---UGAAGCCGC- -5'
28158 5' -55.2 NC_005887.1 + 3092 0.69 0.442241
Target:  5'- gGCCGAGCAUg-GCUuuGCccgCGGCGc -3'
miRNA:   3'- gCGGCUCGUAgaCGAugUGaa-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.