miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28159 5' -63.7 NC_005887.1 + 26913 1.08 0.000141
Target:  5'- cUGCGCCCGAGUCGCUGGCCGCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUCAGCGACCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 17767 0.75 0.0563
Target:  5'- gGCGCCCGguucgaaggacuuccGGUCG-UGGCUGUCGUCGc -3'
miRNA:   3'- aCGCGGGC---------------UCAGCgACCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 29567 0.74 0.069561
Target:  5'- cGCGCCCGccGUCGa-GGCCGCCGgcuaCGa -3'
miRNA:   3'- aCGCGGGCu-CAGCgaCCGGCGGCa---GC- -5'
28159 5' -63.7 NC_005887.1 + 6934 0.73 0.0777
Target:  5'- aGCGCCUGcG-CGUUGGCCGaCGUCGc -3'
miRNA:   3'- aCGCGGGCuCaGCGACCGGCgGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 35892 0.73 0.083243
Target:  5'- cGCGCCCGuacuucaGGUCGCgcacuucgaucucGGCCGgCCGUCc -3'
miRNA:   3'- aCGCGGGC-------UCAGCGa------------CCGGC-GGCAGc -5'
28159 5' -63.7 NC_005887.1 + 11388 0.72 0.091639
Target:  5'- cGCaGCCgGAG-CGCUGGCgGCCGgCGc -3'
miRNA:   3'- aCG-CGGgCUCaGCGACCGgCGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 12123 0.72 0.094182
Target:  5'- aGCGCCagGAcgaGCaGGCCGCCGUCGc -3'
miRNA:   3'- aCGCGGg-CUcagCGaCCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 15483 0.71 0.107929
Target:  5'- cGCGUUCGA---GCUGGCCGCgCGUCa -3'
miRNA:   3'- aCGCGGGCUcagCGACCGGCG-GCAGc -5'
28159 5' -63.7 NC_005887.1 + 10457 0.7 0.149327
Target:  5'- gGUGCCCGAGgccggcgauagucgaCGUcGGCaCGCCGUUGu -3'
miRNA:   3'- aCGCGGGCUCa--------------GCGaCCG-GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 12648 0.69 0.161205
Target:  5'- cGCGgCCGGGUCggcggacaccauGCgcaugccGGCgGCCGUCGa -3'
miRNA:   3'- aCGCgGGCUCAG------------CGa------CCGgCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 22941 0.69 0.161205
Target:  5'- aGCGCgCGAGgaucugauaGCggccGGCgGCCGUCGa -3'
miRNA:   3'- aCGCGgGCUCag-------CGa---CCGgCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 3078 0.69 0.169887
Target:  5'- -uUGCCCGcGG-CGCUGGCCGCaggcgCGUUGa -3'
miRNA:   3'- acGCGGGC-UCaGCGACCGGCG-----GCAGC- -5'
28159 5' -63.7 NC_005887.1 + 1552 0.69 0.169887
Target:  5'- cGCGCCgcgCGAG-CGCc-GCaCGCCGUCGg -3'
miRNA:   3'- aCGCGG---GCUCaGCGacCG-GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 14889 0.68 0.178985
Target:  5'- cGUGCCCGccaucagcGUCGC-GGCCGCCa--- -3'
miRNA:   3'- aCGCGGGCu-------CAGCGaCCGGCGGcagc -5'
28159 5' -63.7 NC_005887.1 + 15573 0.68 0.183694
Target:  5'- cGCGCUCGAuUCGCUGaUCGCCGa-- -3'
miRNA:   3'- aCGCGGGCUcAGCGACcGGCGGCagc -5'
28159 5' -63.7 NC_005887.1 + 26551 0.68 0.193441
Target:  5'- cGUGCCaCGGugcgguGUCGCU-GCCGUCGUCc -3'
miRNA:   3'- aCGCGG-GCU------CAGCGAcCGGCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 861 0.68 0.193441
Target:  5'- gGUGCCCGuGGaCGCgUGGCCcgcGCCGcCGg -3'
miRNA:   3'- aCGCGGGC-UCaGCG-ACCGG---CGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 41285 0.68 0.193441
Target:  5'- cUGCGCaCGGGcgCGCUGcuGCCGCCGg-- -3'
miRNA:   3'- -ACGCGgGCUCa-GCGAC--CGGCGGCagc -5'
28159 5' -63.7 NC_005887.1 + 35630 0.68 0.198483
Target:  5'- gUGUGCCCG-G-CGCUcGCCGCacauGUCGa -3'
miRNA:   3'- -ACGCGGGCuCaGCGAcCGGCGg---CAGC- -5'
28159 5' -63.7 NC_005887.1 + 9468 0.68 0.203638
Target:  5'- --aGCCCGAGU-GCUGGUauucccauuccgCGCCGaUCGa -3'
miRNA:   3'- acgCGGGCUCAgCGACCG------------GCGGC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.