miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28159 5' -63.7 NC_005887.1 + 35051 0.66 0.268312
Target:  5'- gGUuaCgCGAgGUCGCU-GCCGUCGUCGg -3'
miRNA:   3'- aCGcgG-GCU-CAGCGAcCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 12738 0.67 0.217589
Target:  5'- aUGCGCUCGAucgcgccgCGCUGcaacgcgagaacaCCGCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUca------GCGACc------------GGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 13225 0.67 0.225434
Target:  5'- cUGaCGCCagaCGAGgcagagaagaCGCUGaCCGCCGUCGa -3'
miRNA:   3'- -AC-GCGG---GCUCa---------GCGACcGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 14145 0.67 0.225434
Target:  5'- aUGUGCCCGAGcCGaC-GGUCuauCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUCaGC-GaCCGGc--GGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 34482 0.67 0.231184
Target:  5'- cGCGCCCGAGaaGCUGucGCCcggaCCGUgGu -3'
miRNA:   3'- aCGCGGGCUCagCGAC--CGGc---GGCAgC- -5'
28159 5' -63.7 NC_005887.1 + 39800 0.67 0.239441
Target:  5'- uUGCGCgCGucGUCacuucgcacuGCUggauaaagcgcgacgGGCCGCCGUCGc -3'
miRNA:   3'- -ACGCGgGCu-CAG----------CGA---------------CCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 31313 0.67 0.243054
Target:  5'- gGCGCaCCGguGGUCacgucccacguGCcgaccgGGCCGUCGUCGa -3'
miRNA:   3'- aCGCG-GGC--UCAG-----------CGa-----CCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 14497 0.66 0.259878
Target:  5'- cGUGCCCGccgcggugcuugguGGUcCGCUugcaGGCgCGgCCGUCGg -3'
miRNA:   3'- aCGCGGGC--------------UCA-GCGA----CCG-GC-GGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 30500 0.66 0.261805
Target:  5'- uUGCGCaCCGcaaaacugcaucAGccCGCguaGGCgGCCGUCGg -3'
miRNA:   3'- -ACGCG-GGC------------UCa-GCGa--CCGgCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 40739 0.67 0.214299
Target:  5'- cGcCGCCCGcGUCGa-GGCgauCGCCGUUGg -3'
miRNA:   3'- aC-GCGGGCuCAGCgaCCG---GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 7289 0.67 0.20891
Target:  5'- gGcCGCCCGcugugGGUCGUcGuGUCGCCGUCc -3'
miRNA:   3'- aC-GCGGGC-----UCAGCGaC-CGGCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 26551 0.68 0.193441
Target:  5'- cGUGCCaCGGugcgguGUCGCU-GCCGUCGUCc -3'
miRNA:   3'- aCGCGG-GCU------CAGCGAcCGGCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 17767 0.75 0.0563
Target:  5'- gGCGCCCGguucgaaggacuuccGGUCG-UGGCUGUCGUCGc -3'
miRNA:   3'- aCGCGGGC---------------UCAGCgACCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 35892 0.73 0.083243
Target:  5'- cGCGCCCGuacuucaGGUCGCgcacuucgaucucGGCCGgCCGUCc -3'
miRNA:   3'- aCGCGGGC-------UCAGCGa------------CCGGC-GGCAGc -5'
28159 5' -63.7 NC_005887.1 + 11388 0.72 0.091639
Target:  5'- cGCaGCCgGAG-CGCUGGCgGCCGgCGc -3'
miRNA:   3'- aCG-CGGgCUCaGCGACCGgCGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 12123 0.72 0.094182
Target:  5'- aGCGCCagGAcgaGCaGGCCGCCGUCGc -3'
miRNA:   3'- aCGCGGg-CUcagCGaCCGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 15483 0.71 0.107929
Target:  5'- cGCGUUCGA---GCUGGCCGCgCGUCa -3'
miRNA:   3'- aCGCGGGCUcagCGACCGGCG-GCAGc -5'
28159 5' -63.7 NC_005887.1 + 15573 0.68 0.183694
Target:  5'- cGCGCUCGAuUCGCUGaUCGCCGa-- -3'
miRNA:   3'- aCGCGGGCUcAGCGACcGGCGGCagc -5'
28159 5' -63.7 NC_005887.1 + 861 0.68 0.193441
Target:  5'- gGUGCCCGuGGaCGCgUGGCCcgcGCCGcCGg -3'
miRNA:   3'- aCGCGGGC-UCaGCG-ACCGG---CGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 41285 0.68 0.193441
Target:  5'- cUGCGCaCGGGcgCGCUGcuGCCGCCGg-- -3'
miRNA:   3'- -ACGCGgGCUCa-GCGAC--CGGCGGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.