miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28159 5' -63.7 NC_005887.1 + 10177 0.67 0.225434
Target:  5'- cGUGCagCCGAucaGCUGGCCGUCGgcgCGg -3'
miRNA:   3'- aCGCG--GGCUcagCGACCGGCGGCa--GC- -5'
28159 5' -63.7 NC_005887.1 + 14145 0.67 0.225434
Target:  5'- aUGUGCCCGAGcCGaC-GGUCuauCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUCaGC-GaCCGGc--GGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 13225 0.67 0.225434
Target:  5'- cUGaCGCCagaCGAGgcagagaagaCGCUGaCCGCCGUCGa -3'
miRNA:   3'- -AC-GCGG---GCUCa---------GCGACcGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 4265 0.67 0.219806
Target:  5'- cUGCGCgCGcugcagcacuucGGUCGCggucaugucGCCGCUGUCGa -3'
miRNA:   3'- -ACGCGgGC------------UCAGCGac-------CGGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 12738 0.67 0.217589
Target:  5'- aUGCGCUCGAucgcgccgCGCUGcaacgcgagaacaCCGCCGUCGa -3'
miRNA:   3'- -ACGCGGGCUca------GCGACc------------GGCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 40739 0.67 0.214299
Target:  5'- cGcCGCCCGcGUCGa-GGCgauCGCCGUUGg -3'
miRNA:   3'- aC-GCGGGCuCAGCgaCCG---GCGGCAGC- -5'
28159 5' -63.7 NC_005887.1 + 16307 0.67 0.214299
Target:  5'- gGUGCCCGuGcgcUCGCcGGCCGgCGUa- -3'
miRNA:   3'- aCGCGGGCuC---AGCGaCCGGCgGCAgc -5'
28159 5' -63.7 NC_005887.1 + 7289 0.67 0.20891
Target:  5'- gGcCGCCCGcugugGGUCGUcGuGUCGCCGUCc -3'
miRNA:   3'- aC-GCGGGC-----UCAGCGaC-CGGCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 5482 0.67 0.20891
Target:  5'- cGCGCC--GGUCGCUGcggcGCCGcCCGcCGg -3'
miRNA:   3'- aCGCGGgcUCAGCGAC----CGGC-GGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 27215 0.67 0.20891
Target:  5'- cGCGCCCGuGGcCGUUcGGCCGCgUGaUCGc -3'
miRNA:   3'- aCGCGGGC-UCaGCGA-CCGGCG-GC-AGC- -5'
28159 5' -63.7 NC_005887.1 + 12981 0.67 0.208377
Target:  5'- cGCGCUCGcgaaaccGGcgUGCUGGCuCGCCGUg- -3'
miRNA:   3'- aCGCGGGC-------UCa-GCGACCG-GCGGCAgc -5'
28159 5' -63.7 NC_005887.1 + 9468 0.68 0.203638
Target:  5'- --aGCCCGAGU-GCUGGUauucccauuccgCGCCGaUCGa -3'
miRNA:   3'- acgCGGGCUCAgCGACCG------------GCGGC-AGC- -5'
28159 5' -63.7 NC_005887.1 + 35630 0.68 0.198483
Target:  5'- gUGUGCCCG-G-CGCUcGCCGCacauGUCGa -3'
miRNA:   3'- -ACGCGGGCuCaGCGAcCGGCGg---CAGC- -5'
28159 5' -63.7 NC_005887.1 + 861 0.68 0.193441
Target:  5'- gGUGCCCGuGGaCGCgUGGCCcgcGCCGcCGg -3'
miRNA:   3'- aCGCGGGC-UCaGCG-ACCGG---CGGCaGC- -5'
28159 5' -63.7 NC_005887.1 + 26551 0.68 0.193441
Target:  5'- cGUGCCaCGGugcgguGUCGCU-GCCGUCGUCc -3'
miRNA:   3'- aCGCGG-GCU------CAGCGAcCGGCGGCAGc -5'
28159 5' -63.7 NC_005887.1 + 41285 0.68 0.193441
Target:  5'- cUGCGCaCGGGcgCGCUGcuGCCGCCGg-- -3'
miRNA:   3'- -ACGCGgGCUCa-GCGAC--CGGCGGCagc -5'
28159 5' -63.7 NC_005887.1 + 15573 0.68 0.183694
Target:  5'- cGCGCUCGAuUCGCUGaUCGCCGa-- -3'
miRNA:   3'- aCGCGGGCUcAGCGACcGGCGGCagc -5'
28159 5' -63.7 NC_005887.1 + 14889 0.68 0.178985
Target:  5'- cGUGCCCGccaucagcGUCGC-GGCCGCCa--- -3'
miRNA:   3'- aCGCGGGCu-------CAGCGaCCGGCGGcagc -5'
28159 5' -63.7 NC_005887.1 + 3078 0.69 0.169887
Target:  5'- -uUGCCCGcGG-CGCUGGCCGCaggcgCGUUGa -3'
miRNA:   3'- acGCGGGC-UCaGCGACCGGCG-----GCAGC- -5'
28159 5' -63.7 NC_005887.1 + 1552 0.69 0.169887
Target:  5'- cGCGCCgcgCGAG-CGCc-GCaCGCCGUCGg -3'
miRNA:   3'- aCGCGG---GCUCaGCGacCG-GCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.