miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 11305 0.67 0.462019
Target:  5'- gCAgcgGCCGGCUCgGCAg---CGAGCGCc -3'
miRNA:   3'- gGUa--CGGCCGGG-UGUgcaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 41078 0.67 0.462019
Target:  5'- gCCAguagacGCCuGUCCACACGUaccaggcuUCGAGCu- -3'
miRNA:   3'- -GGUa-----CGGcCGGGUGUGCA--------AGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 40678 0.67 0.462019
Target:  5'- gCCgAUGUgCGGCCaCACACGcucgUCGAGgaacCGCg -3'
miRNA:   3'- -GG-UACG-GCCGG-GUGUGCa---AGCUC----GCG- -5'
28161 5' -57.4 NC_005887.1 + 21790 0.67 0.462019
Target:  5'- aUCAUcGCCGGCaucaaCACgACGUcCGcGGCGCu -3'
miRNA:   3'- -GGUA-CGGCCGg----GUG-UGCAaGC-UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 34563 0.67 0.461027
Target:  5'- gCGUGCaguaccaCGGUCCGgGCGacagcuucUCGGGCGCg -3'
miRNA:   3'- gGUACG-------GCCGGGUgUGCa-------AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 26333 0.68 0.442406
Target:  5'- gCCGUgGCCGGCgCugGC---CGGGUGCg -3'
miRNA:   3'- -GGUA-CGGCCGgGugUGcaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 11406 0.68 0.442406
Target:  5'- ---gGCCGGCgCCGCcaaggcauCGUcUGAGCGCc -3'
miRNA:   3'- gguaCGGCCG-GGUGu-------GCAaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 4901 0.68 0.442406
Target:  5'- gCCGaggGCCGGCgCGaggUGUUCGuGCGCc -3'
miRNA:   3'- -GGUa--CGGCCGgGUgu-GCAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 23628 0.68 0.432777
Target:  5'- gCAcUGCCGGCCgGCGaug-CGGGCGg -3'
miRNA:   3'- gGU-ACGGCCGGgUGUgcaaGCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 34940 0.68 0.432777
Target:  5'- gCCGUcGCCGGCUUcgaACucgGCGggCGuGCGCa -3'
miRNA:   3'- -GGUA-CGGCCGGG---UG---UGCaaGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 32771 0.68 0.432777
Target:  5'- gCCAUgcaGCCGGCUCgugcGCAgGaUCGGcGCGCg -3'
miRNA:   3'- -GGUA---CGGCCGGG----UGUgCaAGCU-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 34025 0.68 0.432777
Target:  5'- aCGUG-CGGCUugUACAU-UUCGAGCGCa -3'
miRNA:   3'- gGUACgGCCGG--GUGUGcAAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 31678 0.68 0.432777
Target:  5'- gCCGUuaGCCgGGCCgGCugGUUCGucGGCa- -3'
miRNA:   3'- -GGUA--CGG-CCGGgUGugCAAGC--UCGcg -5'
28161 5' -57.4 NC_005887.1 + 26944 0.68 0.423271
Target:  5'- aCCcUGCUGGcCCCACAgauccugcaggcCGUUCG-GCGa -3'
miRNA:   3'- -GGuACGGCC-GGGUGU------------GCAAGCuCGCg -5'
28161 5' -57.4 NC_005887.1 + 31185 0.68 0.423271
Target:  5'- -uGUGCUcgGGCaugCGCGCGUagauuUCGGGCGCc -3'
miRNA:   3'- ggUACGG--CCGg--GUGUGCA-----AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 37073 0.68 0.419504
Target:  5'- aCGUGUucgcguaCGGCCUGCGCGUgcucgccggcgagcUCGAcccGCGCg -3'
miRNA:   3'- gGUACG-------GCCGGGUGUGCA--------------AGCU---CGCG- -5'
28161 5' -57.4 NC_005887.1 + 1763 0.68 0.413892
Target:  5'- gCAUGCCGcGCagcuugCGCuCGUgcucggggcgaUCGAGCGCg -3'
miRNA:   3'- gGUACGGC-CGg-----GUGuGCA-----------AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13630 0.68 0.413892
Target:  5'- gCGUcGUCGGCCUGCuCGggCGgcAGCGCa -3'
miRNA:   3'- gGUA-CGGCCGGGUGuGCaaGC--UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 18247 0.68 0.413892
Target:  5'- gCCAcGCCgGGCaCCGuCACGggCGAGCu- -3'
miRNA:   3'- -GGUaCGG-CCG-GGU-GUGCaaGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 17149 0.68 0.404642
Target:  5'- -gGUGCUGGUCgGCgaagaucgcgagGCGUggGAGCGCg -3'
miRNA:   3'- ggUACGGCCGGgUG------------UGCAagCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.