miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 23568 0.66 0.533945
Target:  5'- gCAUcGCCGGCCgGCA-GUgCGAaCGCg -3'
miRNA:   3'- gGUA-CGGCCGGgUGUgCAaGCUcGCG- -5'
28161 5' -57.4 NC_005887.1 + 15909 0.66 0.533945
Target:  5'- gCA-GCUGGCCgACcuGCGUUCc-GCGCg -3'
miRNA:   3'- gGUaCGGCCGGgUG--UGCAAGcuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 24799 0.66 0.533945
Target:  5'- -uGUGCUGGCCgACAgCGgcuucUCGAuguccuGCGCa -3'
miRNA:   3'- ggUACGGCCGGgUGU-GCa----AGCU------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 1489 0.66 0.523398
Target:  5'- gCGUGCgGcGCUCGCGCGgcgCGGccGUGCg -3'
miRNA:   3'- gGUACGgC-CGGGUGUGCaa-GCU--CGCG- -5'
28161 5' -57.4 NC_005887.1 + 24811 0.66 0.523398
Target:  5'- aCGUcGCCGGCCCGaagcucgGUUCGcuggaaguGCGCa -3'
miRNA:   3'- gGUA-CGGCCGGGUgug----CAAGCu-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 1916 0.66 0.523398
Target:  5'- aCCAgugGuCCGaGUCCgGCGCGUUCGuGuCGCc -3'
miRNA:   3'- -GGUa--C-GGC-CGGG-UGUGCAAGCuC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 4955 0.67 0.512932
Target:  5'- ---cGCCGGCCCucggcgacCAuCGUcgCGAGCGg -3'
miRNA:   3'- gguaCGGCCGGGu-------GU-GCAa-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 40274 0.67 0.502554
Target:  5'- gCCGcugGCCGGCaagucggugCCGCucgauuCGUUCGAGCu- -3'
miRNA:   3'- -GGUa--CGGCCG---------GGUGu-----GCAAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 24536 0.67 0.502554
Target:  5'- aUCAcGCgCGGCCgCACcuuCGgcCGGGCGCc -3'
miRNA:   3'- -GGUaCG-GCCGG-GUGu--GCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13326 0.67 0.502554
Target:  5'- ---cGCCGGCCgCAuCGCGgaucUCGccGCGCa -3'
miRNA:   3'- gguaCGGCCGG-GU-GUGCa---AGCu-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 17501 0.67 0.502554
Target:  5'- gCCGUGCaugauGGCacggaaaugCGCACGcUCGAGgGCg -3'
miRNA:   3'- -GGUACGg----CCGg--------GUGUGCaAGCUCgCG- -5'
28161 5' -57.4 NC_005887.1 + 5098 0.67 0.492268
Target:  5'- gCCGUGCCuucguuggcuucGGUCUGCGCcucggCGGGCGUg -3'
miRNA:   3'- -GGUACGG------------CCGGGUGUGcaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 10925 0.67 0.492268
Target:  5'- gUcgGCCGGCCUgcuCACGccCGAuuacGCGCa -3'
miRNA:   3'- gGuaCGGCCGGGu--GUGCaaGCU----CGCG- -5'
28161 5' -57.4 NC_005887.1 + 934 0.67 0.48208
Target:  5'- uCCGgcgGCgCGGgCCACGCGUccaCGGGCa- -3'
miRNA:   3'- -GGUa--CG-GCCgGGUGUGCAa--GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 35400 0.67 0.481067
Target:  5'- cUCGUgGCCGGCCgccgcggCGCGCGgcagUgGAGCGa -3'
miRNA:   3'- -GGUA-CGGCCGG-------GUGUGCa---AgCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 32604 0.67 0.478034
Target:  5'- aCGUGCa-GCCCGCACacgagcuucccgUCGAGCGg -3'
miRNA:   3'- gGUACGgcCGGGUGUGca----------AGCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 38227 0.67 0.471996
Target:  5'- gCCuUGCgcgUGGCCgGgAUGgUCGAGCGCu -3'
miRNA:   3'- -GGuACG---GCCGGgUgUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 35965 0.67 0.471996
Target:  5'- cUCGUGCCcuucGCCC-CGCGUUCGcccgugauGUGCu -3'
miRNA:   3'- -GGUACGGc---CGGGuGUGCAAGCu-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 29381 0.67 0.471996
Target:  5'- gCAUGCCcucGGCCCAUGC---CG-GCGCg -3'
miRNA:   3'- gGUACGG---CCGGGUGUGcaaGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40050 0.67 0.471996
Target:  5'- gCAUGUCGGgCCACGgCGUcUCGcccuuGUGCg -3'
miRNA:   3'- gGUACGGCCgGGUGU-GCA-AGCu----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.