miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 11305 0.67 0.462019
Target:  5'- gCAgcgGCCGGCUCgGCAg---CGAGCGCc -3'
miRNA:   3'- gGUa--CGGCCGGG-UGUgcaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 11395 0.66 0.544565
Target:  5'- gCGUaCCGGCCguCGCGguugCG-GCGCu -3'
miRNA:   3'- gGUAcGGCCGGguGUGCaa--GCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 11406 0.68 0.442406
Target:  5'- ---gGCCGGCgCCGCcaaggcauCGUcUGAGCGCc -3'
miRNA:   3'- gguaCGGCCG-GGUGu-------GCAaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 12636 0.68 0.404642
Target:  5'- aCCA-GCCacuGCCCGCAgGUUaCGAGUGg -3'
miRNA:   3'- -GGUaCGGc--CGGGUGUgCAA-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 12965 0.7 0.342856
Target:  5'- gCGUGCUGGCUCGC-CGUgcCGAucagcucGCGCa -3'
miRNA:   3'- gGUACGGCCGGGUGuGCAa-GCU-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 13115 0.69 0.368977
Target:  5'- gCGUGCCgaaGGUCgACACc-UCGAGCGUg -3'
miRNA:   3'- gGUACGG---CCGGgUGUGcaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13326 0.67 0.502554
Target:  5'- ---cGCCGGCCgCAuCGCGgaucUCGccGCGCa -3'
miRNA:   3'- gguaCGGCCGG-GU-GUGCa---AGCu-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 13448 0.73 0.20727
Target:  5'- gCCGcGCCGGCCUucaGCG--CGAGCGCc -3'
miRNA:   3'- -GGUaCGGCCGGGug-UGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13630 0.68 0.413892
Target:  5'- gCGUcGUCGGCCUGCuCGggCGgcAGCGCa -3'
miRNA:   3'- gGUA-CGGCCGGGUGuGCaaGC--UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 14218 0.71 0.282455
Target:  5'- aCAgGgCGGCgCCGCGCuGUUCG-GCGCg -3'
miRNA:   3'- gGUaCgGCCG-GGUGUG-CAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 14362 0.69 0.377689
Target:  5'- gCGUGCCGGgC-ACcUGUUCGAGuCGCc -3'
miRNA:   3'- gGUACGGCCgGgUGuGCAAGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 14663 0.72 0.255232
Target:  5'- cCCGUcGCCGGuucgacgcugcCCCGCACGaUCGGGCu- -3'
miRNA:   3'- -GGUA-CGGCC-----------GGGUGUGCaAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 15044 0.71 0.296907
Target:  5'- gCC-UGCgCGGCCUGCGCGgcguaggcgUCGAGuUGCg -3'
miRNA:   3'- -GGuACG-GCCGGGUGUGCa--------AGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 15218 0.66 0.533945
Target:  5'- gCCAUGCCGucgagcGCCUGCAUGgggucggUCGGGUcCg -3'
miRNA:   3'- -GGUACGGC------CGGGUGUGCa------AGCUCGcG- -5'
28161 5' -57.4 NC_005887.1 + 15463 0.66 0.566003
Target:  5'- gCgAUGaCCGcGCaCCaagACGCGUUCGAGCu- -3'
miRNA:   3'- -GgUAC-GGC-CG-GG---UGUGCAAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 15909 0.66 0.533945
Target:  5'- gCA-GCUGGCCgACcuGCGUUCc-GCGCg -3'
miRNA:   3'- gGUaCGGCCGGgUG--UGCAAGcuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 15966 0.76 0.130708
Target:  5'- gCAgGUCGGCCagcuGCGCG-UCGAGCGCa -3'
miRNA:   3'- gGUaCGGCCGGg---UGUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 16544 0.8 0.074354
Target:  5'- aCCAgcccGCCGGauccugCCGCGCGgUCGAGCGCa -3'
miRNA:   3'- -GGUa---CGGCCg-----GGUGUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 17023 0.72 0.248771
Target:  5'- gCCGacauUGCC-GCCCGCGCGgUUGaAGCGCu -3'
miRNA:   3'- -GGU----ACGGcCGGGUGUGCaAGC-UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 17149 0.68 0.404642
Target:  5'- -gGUGCUGGUCgGCgaagaucgcgagGCGUggGAGCGCg -3'
miRNA:   3'- ggUACGGCCGGgUG------------UGCAagCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.