miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 520 0.81 0.062589
Target:  5'- cUCAUGCCcGCaCCACACGcgcagagggUUCGAGCGCa -3'
miRNA:   3'- -GGUACGGcCG-GGUGUGC---------AAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 934 0.67 0.48208
Target:  5'- uCCGgcgGCgCGGgCCACGCGUccaCGGGCa- -3'
miRNA:   3'- -GGUa--CG-GCCgGGUGUGCAa--GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 1460 0.74 0.171889
Target:  5'- gCCGaGCgGGCCCAUgAUGaaCGAGCGCg -3'
miRNA:   3'- -GGUaCGgCCGGGUG-UGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 1489 0.66 0.523398
Target:  5'- gCGUGCgGcGCUCGCGCGgcgCGGccGUGCg -3'
miRNA:   3'- gGUACGgC-CGGGUGUGCaa-GCU--CGCG- -5'
28161 5' -57.4 NC_005887.1 + 1560 0.7 0.35197
Target:  5'- ---cGCaCGGCCgCGC-CGcgCGAGCGCc -3'
miRNA:   3'- gguaCG-GCCGG-GUGuGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 1763 0.68 0.413892
Target:  5'- gCAUGCCGcGCagcuugCGCuCGUgcucggggcgaUCGAGCGCg -3'
miRNA:   3'- gGUACGGC-CGg-----GUGuGCA-----------AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 1916 0.66 0.523398
Target:  5'- aCCAgugGuCCGaGUCCgGCGCGUUCGuGuCGCc -3'
miRNA:   3'- -GGUa--C-GGC-CGGG-UGUGCAAGCuC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 2652 0.66 0.544565
Target:  5'- aCC-UGCUGGUggGCGCGggCGAGCa- -3'
miRNA:   3'- -GGuACGGCCGggUGUGCaaGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 3162 0.7 0.35197
Target:  5'- -gAUGCCGcGCCUcgACAaGUUCGGGCaGCu -3'
miRNA:   3'- ggUACGGC-CGGG--UGUgCAAGCUCG-CG- -5'
28161 5' -57.4 NC_005887.1 + 3190 0.66 0.566003
Target:  5'- --cUGCCGcGCCCGgacaGCGagaagggccgCGAGCGCu -3'
miRNA:   3'- gguACGGC-CGGGUg---UGCaa--------GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 4901 0.68 0.442406
Target:  5'- gCCGaggGCCGGCgCGaggUGUUCGuGCGCc -3'
miRNA:   3'- -GGUa--CGGCCGgGUgu-GCAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 4955 0.67 0.512932
Target:  5'- ---cGCCGGCCCucggcgacCAuCGUcgCGAGCGg -3'
miRNA:   3'- gguaCGGCCGGGu-------GU-GCAa-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 5098 0.67 0.492268
Target:  5'- gCCGUGCCuucguuggcuucGGUCUGCGCcucggCGGGCGUg -3'
miRNA:   3'- -GGUACGG------------CCGGGUGUGcaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 5726 0.66 0.533945
Target:  5'- gCCuucGCCGGUgCCGCAUGcuucgcUUCGAGCucGCg -3'
miRNA:   3'- -GGua-CGGCCG-GGUGUGC------AAGCUCG--CG- -5'
28161 5' -57.4 NC_005887.1 + 6999 0.66 0.576805
Target:  5'- aCCAgacgGCgCGGCCCAUGC---CGAGuUGCg -3'
miRNA:   3'- -GGUa---CG-GCCGGGUGUGcaaGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 7955 0.66 0.555254
Target:  5'- aUCGUcGCCGGCCUGCucguCGgaCGAGuCGg -3'
miRNA:   3'- -GGUA-CGGCCGGGUGu---GCaaGCUC-GCg -5'
28161 5' -57.4 NC_005887.1 + 8286 0.74 0.191392
Target:  5'- uCgAUGCUGaacaGCCCGCGCGUgUCGGuGCGCg -3'
miRNA:   3'- -GgUACGGC----CGGGUGUGCA-AGCU-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 8470 0.79 0.078727
Target:  5'- gUCGUGCuCGGCCCACGCGccuugucgcUUCGucGCGCu -3'
miRNA:   3'- -GGUACG-GCCGGGUGUGC---------AAGCu-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 10925 0.67 0.492268
Target:  5'- gUcgGCCGGCCUgcuCACGccCGAuuacGCGCa -3'
miRNA:   3'- gGuaCGGCCGGGu--GUGCaaGCU----CGCG- -5'
28161 5' -57.4 NC_005887.1 + 11157 0.66 0.533945
Target:  5'- aCCA-GCCGauGCgCCACGCGgaaUCGuuugagcagcGGCGCg -3'
miRNA:   3'- -GGUaCGGC--CG-GGUGUGCa--AGC----------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.