miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 26944 0.68 0.423271
Target:  5'- aCCcUGCUGGcCCCACAgauccugcaggcCGUUCG-GCGa -3'
miRNA:   3'- -GGuACGGCC-GGGUGU------------GCAAGCuCGCg -5'
28161 5' -57.4 NC_005887.1 + 30867 0.69 0.377689
Target:  5'- ---cGCUGGUCCugAUGccaGAGCGCg -3'
miRNA:   3'- gguaCGGCCGGGugUGCaagCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 14362 0.69 0.377689
Target:  5'- gCGUGCCGGgC-ACcUGUUCGAGuCGCc -3'
miRNA:   3'- gGUACGGCCgGgUGuGCAAGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 34657 0.69 0.377689
Target:  5'- gCCGgcuUGCCGGUuuccggauCCGcCACGUugUCGAGCaGCa -3'
miRNA:   3'- -GGU---ACGGCCG--------GGU-GUGCA--AGCUCG-CG- -5'
28161 5' -57.4 NC_005887.1 + 29921 0.69 0.383869
Target:  5'- aCAUGCCgcgGGCCUcgcGCcgaucucgggaucgACGgugUCGAGCGCc -3'
miRNA:   3'- gGUACGG---CCGGG---UG--------------UGCa--AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 33754 0.69 0.395523
Target:  5'- ---cGCCGGCCUuCACGagcaUCuGGCGCg -3'
miRNA:   3'- gguaCGGCCGGGuGUGCa---AGcUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 12636 0.68 0.404642
Target:  5'- aCCA-GCCacuGCCCGCAgGUUaCGAGUGg -3'
miRNA:   3'- -GGUaCGGc--CGGGUGUgCAA-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 17149 0.68 0.404642
Target:  5'- -gGUGCUGGUCgGCgaagaucgcgagGCGUggGAGCGCg -3'
miRNA:   3'- ggUACGGCCGGgUG------------UGCAagCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 18247 0.68 0.413892
Target:  5'- gCCAcGCCgGGCaCCGuCACGggCGAGCu- -3'
miRNA:   3'- -GGUaCGG-CCG-GGU-GUGCaaGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 13115 0.69 0.368977
Target:  5'- gCGUGCCgaaGGUCgACACc-UCGAGCGUg -3'
miRNA:   3'- gGUACGG---CCGGgUGUGcaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 24250 0.7 0.35197
Target:  5'- aCGUGCCGGCagcagCCACGgCGagUCGccggauAGCGCg -3'
miRNA:   3'- gGUACGGCCG-----GGUGU-GCa-AGC------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 3162 0.7 0.35197
Target:  5'- -gAUGCCGcGCCUcgACAaGUUCGGGCaGCu -3'
miRNA:   3'- ggUACGGC-CGGG--UGUgCAAGCUCG-CG- -5'
28161 5' -57.4 NC_005887.1 + 34343 0.73 0.224273
Target:  5'- gCCGUggcGCCGGCCacgGCugGagaCGAGCGCc -3'
miRNA:   3'- -GGUA---CGGCCGGg--UGugCaa-GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 32274 0.72 0.238716
Target:  5'- gCAUGauCCGGUCCACACGgggCGAucgucgggccagccgGCGCg -3'
miRNA:   3'- gGUAC--GGCCGGGUGUGCaa-GCU---------------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 14663 0.72 0.255232
Target:  5'- cCCGUcGCCGGuucgacgcugcCCCGCACGaUCGGGCu- -3'
miRNA:   3'- -GGUA-CGGCC-----------GGGUGUGCaAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 26491 0.72 0.261829
Target:  5'- gCAUGCCGGCCgCuuccuCgACGauuuccUCGAGCGCc -3'
miRNA:   3'- gGUACGGCCGG-Gu----G-UGCa-----AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 14218 0.71 0.282455
Target:  5'- aCAgGgCGGCgCCGCGCuGUUCG-GCGCg -3'
miRNA:   3'- gGUaCgGCCG-GGUGUG-CAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 27080 0.71 0.28961
Target:  5'- uCgGUGCCGcGCUugcugCGCugGUUCGAcacGCGCg -3'
miRNA:   3'- -GgUACGGC-CGG-----GUGugCAAGCU---CGCG- -5'
28161 5' -57.4 NC_005887.1 + 23974 0.71 0.296907
Target:  5'- ----cUCGGCCCAC-UGcUCGAGCGCg -3'
miRNA:   3'- gguacGGCCGGGUGuGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 17267 0.71 0.296907
Target:  5'- aUCGUGCCGGgCgAgACG-UCGGGCGg -3'
miRNA:   3'- -GGUACGGCCgGgUgUGCaAGCUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.