miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 27446 1.14 0.000227
Target:  5'- cCCAUGCCGGCCCACACGUUCGAGCGCg -3'
miRNA:   3'- -GGUACGGCCGGGUGUGCAAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 520 0.81 0.062589
Target:  5'- cUCAUGCCcGCaCCACACGcgcagagggUUCGAGCGCa -3'
miRNA:   3'- -GGUACGGcCG-GGUGUGC---------AAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 16544 0.8 0.074354
Target:  5'- aCCAgcccGCCGGauccugCCGCGCGgUCGAGCGCa -3'
miRNA:   3'- -GGUa---CGGCCg-----GGUGUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40234 0.79 0.076292
Target:  5'- uUCGUGCCGucgcgcaGCUCACACGcggCGAGCGCg -3'
miRNA:   3'- -GGUACGGC-------CGGGUGUGCaa-GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 8470 0.79 0.078727
Target:  5'- gUCGUGCuCGGCCCACGCGccuugucgcUUCGucGCGCu -3'
miRNA:   3'- -GGUACG-GCCGGGUGUGC---------AAGCu-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 15966 0.76 0.130708
Target:  5'- gCAgGUCGGCCagcuGCGCG-UCGAGCGCa -3'
miRNA:   3'- gGUaCGGCCGGg---UGUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 32808 0.76 0.134377
Target:  5'- ---cGCCGGCgCGCACG--CGAGCGCc -3'
miRNA:   3'- gguaCGGCCGgGUGUGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 22130 0.74 0.171889
Target:  5'- gCCGUGCUGGUuguggguucagCCAUAucggcuccuucuUGUUCGAGCGCu -3'
miRNA:   3'- -GGUACGGCCG-----------GGUGU------------GCAAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 1460 0.74 0.171889
Target:  5'- gCCGaGCgGGCCCAUgAUGaaCGAGCGCg -3'
miRNA:   3'- -GGUaCGgCCGGGUG-UGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 8286 0.74 0.191392
Target:  5'- uCgAUGCUGaacaGCCCGCGCGUgUCGGuGCGCg -3'
miRNA:   3'- -GgUACGGC----CGGGUGUGCA-AGCU-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 32885 0.74 0.191392
Target:  5'- gCCAUcacGUCGGCCCGC-UGUUCGugcccgugaagcGGCGCg -3'
miRNA:   3'- -GGUA---CGGCCGGGUGuGCAAGC------------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 23588 0.73 0.201854
Target:  5'- gCCA-GCUcaCCCGCGCGUUCGucAGCGCg -3'
miRNA:   3'- -GGUaCGGccGGGUGUGCAAGC--UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13448 0.73 0.20727
Target:  5'- gCCGcGCCGGCCUucaGCG--CGAGCGCc -3'
miRNA:   3'- -GGUaCGGCCGGGug-UGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 22900 0.73 0.21281
Target:  5'- aCCGagaucUGCCGGUUgaGCACGUUCGGauGCGCc -3'
miRNA:   3'- -GGU-----ACGGCCGGg-UGUGCAAGCU--CGCG- -5'
28161 5' -57.4 NC_005887.1 + 31740 0.73 0.224273
Target:  5'- aCCA-GCCGGCCCGgcuaACGgcUUCuGGCGCg -3'
miRNA:   3'- -GGUaCGGCCGGGUg---UGC--AAGcUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 34343 0.73 0.224273
Target:  5'- gCCGUggcGCCGGCCacgGCugGagaCGAGCGCc -3'
miRNA:   3'- -GGUA---CGGCCGGg--UGugCaa-GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 32274 0.72 0.238716
Target:  5'- gCAUGauCCGGUCCACACGgggCGAucgucgggccagccgGCGCg -3'
miRNA:   3'- gGUAC--GGCCGGGUGUGCaa-GCU---------------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 17023 0.72 0.248771
Target:  5'- gCCGacauUGCC-GCCCGCGCGgUUGaAGCGCu -3'
miRNA:   3'- -GGU----ACGGcCGGGUGUGCaAGC-UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 14663 0.72 0.255232
Target:  5'- cCCGUcGCCGGuucgacgcugcCCCGCACGaUCGGGCu- -3'
miRNA:   3'- -GGUA-CGGCC-----------GGGUGUGCaAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 26491 0.72 0.261829
Target:  5'- gCAUGCCGGCCgCuuccuCgACGauuuccUCGAGCGCc -3'
miRNA:   3'- gGUACGGCCGG-Gu----G-UGCa-----AGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.