miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 39956 0.71 0.282455
Target:  5'- gUAUGCUGGUCCACcauucACGUgaugcgCGAGgCGCu -3'
miRNA:   3'- gGUACGGCCGGGUG-----UGCAa-----GCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 23118 0.71 0.282455
Target:  5'- aCCcgGCUccuggcagacuGGCCCAUACGUUCGAuaccuuCGCc -3'
miRNA:   3'- -GGuaCGG-----------CCGGGUGUGCAAGCUc-----GCG- -5'
28161 5' -57.4 NC_005887.1 + 14218 0.71 0.282455
Target:  5'- aCAgGgCGGCgCCGCGCuGUUCG-GCGCg -3'
miRNA:   3'- gGUaCgGCCG-GGUGUG-CAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 27080 0.71 0.28961
Target:  5'- uCgGUGCCGcGCUugcugCGCugGUUCGAcacGCGCg -3'
miRNA:   3'- -GgUACGGC-CGG-----GUGugCAAGCU---CGCG- -5'
28161 5' -57.4 NC_005887.1 + 23974 0.71 0.296907
Target:  5'- ----cUCGGCCCAC-UGcUCGAGCGCg -3'
miRNA:   3'- gguacGGCCGGGUGuGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 15044 0.71 0.296907
Target:  5'- gCC-UGCgCGGCCUGCGCGgcguaggcgUCGAGuUGCg -3'
miRNA:   3'- -GGuACG-GCCGGGUGUGCa--------AGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 17267 0.71 0.296907
Target:  5'- aUCGUGCCGGgCgAgACG-UCGGGCGg -3'
miRNA:   3'- -GGUACGGCCgGgUgUGCaAGCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 35433 0.7 0.311928
Target:  5'- gCUGUGCaGGCCCGCGUGgugcCGGGCGUg -3'
miRNA:   3'- -GGUACGgCCGGGUGUGCaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 37980 0.7 0.317319
Target:  5'- gCC-UGCUGGggcauggaaaacgaCCCAC-CGcUUCGAGCGCu -3'
miRNA:   3'- -GGuACGGCC--------------GGGUGuGC-AAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 29606 0.7 0.319652
Target:  5'- cCUGUGCCaGGCCguCGCGcgCGAcGUGCu -3'
miRNA:   3'- -GGUACGG-CCGGguGUGCaaGCU-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 36400 0.7 0.319652
Target:  5'- ---cGUCGGCCUAUACcuggaUCGAGUGCg -3'
miRNA:   3'- gguaCGGCCGGGUGUGca---AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 12965 0.7 0.342856
Target:  5'- gCGUGCUGGCUCGC-CGUgcCGAucagcucGCGCa -3'
miRNA:   3'- gGUACGGCCGGGUGuGCAa-GCU-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 24250 0.7 0.35197
Target:  5'- aCGUGCCGGCagcagCCACGgCGagUCGccggauAGCGCg -3'
miRNA:   3'- gGUACGGCCG-----GGUGU-GCa-AGC------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 3162 0.7 0.35197
Target:  5'- -gAUGCCGcGCCUcgACAaGUUCGGGCaGCu -3'
miRNA:   3'- ggUACGGC-CGGG--UGUgCAAGCUCG-CG- -5'
28161 5' -57.4 NC_005887.1 + 1560 0.7 0.35197
Target:  5'- ---cGCaCGGCCgCGC-CGcgCGAGCGCc -3'
miRNA:   3'- gguaCG-GCCGG-GUGuGCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 21395 0.7 0.35197
Target:  5'- uUCGUaCCGGCCgAUGCGgUCG-GCGCg -3'
miRNA:   3'- -GGUAcGGCCGGgUGUGCaAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 13115 0.69 0.368977
Target:  5'- gCGUGCCgaaGGUCgACACc-UCGAGCGUg -3'
miRNA:   3'- gGUACGG---CCGGgUGUGcaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 18203 0.69 0.368977
Target:  5'- aCGUcGgCGGCCCGCGC-UUCGccgguugcguacAGCGCg -3'
miRNA:   3'- gGUA-CgGCCGGGUGUGcAAGC------------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 18751 0.69 0.376812
Target:  5'- cCCugcGCCGcauCCUGCACGUUCGAcgagacuGCGCg -3'
miRNA:   3'- -GGua-CGGCc--GGGUGUGCAAGCU-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 14362 0.69 0.377689
Target:  5'- gCGUGCCGGgC-ACcUGUUCGAGuCGCc -3'
miRNA:   3'- gGUACGGCCgGgUGuGCAAGCUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.