miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 40321 0.66 0.576805
Target:  5'- aCAUGCCGaagacguucgccGCCgaaauggACugGccgUCGAGCGCg -3'
miRNA:   3'- gGUACGGC------------CGGg------UGugCa--AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 3190 0.66 0.566003
Target:  5'- --cUGCCGcGCCCGgacaGCGagaagggccgCGAGCGCu -3'
miRNA:   3'- gguACGGC-CGGGUg---UGCaa--------GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 15463 0.66 0.566003
Target:  5'- gCgAUGaCCGcGCaCCaagACGCGUUCGAGCu- -3'
miRNA:   3'- -GgUAC-GGC-CG-GG---UGUGCAAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 6999 0.66 0.576805
Target:  5'- aCCAgacgGCgCGGCCCAUGC---CGAGuUGCg -3'
miRNA:   3'- -GGUa---CG-GCCGGGUGUGcaaGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 26497 0.66 0.576805
Target:  5'- ---cGCgCGGCUgcagCGCGCGUUCccGCGCg -3'
miRNA:   3'- gguaCG-GCCGG----GUGUGCAAGcuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 25084 0.66 0.566003
Target:  5'- aCCGgcugGCCGGCggCCGC-CGgcgCGAGCu- -3'
miRNA:   3'- -GGUa---CGGCCG--GGUGuGCaa-GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 32604 0.67 0.478034
Target:  5'- aCGUGCa-GCCCGCACacgagcuucccgUCGAGCGg -3'
miRNA:   3'- gGUACGgcCGGGUGUGca----------AGCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 10925 0.67 0.492268
Target:  5'- gUcgGCCGGCCUgcuCACGccCGAuuacGCGCa -3'
miRNA:   3'- gGuaCGGCCGGGu--GUGCaaGCU----CGCG- -5'
28161 5' -57.4 NC_005887.1 + 17501 0.67 0.502554
Target:  5'- gCCGUGCaugauGGCacggaaaugCGCACGcUCGAGgGCg -3'
miRNA:   3'- -GGUACGg----CCGg--------GUGUGCaAGCUCgCG- -5'
28161 5' -57.4 NC_005887.1 + 13326 0.67 0.502554
Target:  5'- ---cGCCGGCCgCAuCGCGgaucUCGccGCGCa -3'
miRNA:   3'- gguaCGGCCGG-GU-GUGCa---AGCu-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 24536 0.67 0.502554
Target:  5'- aUCAcGCgCGGCCgCACcuuCGgcCGGGCGCc -3'
miRNA:   3'- -GGUaCG-GCCGG-GUGu--GCaaGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40274 0.67 0.502554
Target:  5'- gCCGcugGCCGGCaagucggugCCGCucgauuCGUUCGAGCu- -3'
miRNA:   3'- -GGUa--CGGCCG---------GGUGu-----GCAAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 38227 0.67 0.471996
Target:  5'- gCCuUGCgcgUGGCCgGgAUGgUCGAGCGCu -3'
miRNA:   3'- -GGuACG---GCCGGgUgUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 35965 0.67 0.471996
Target:  5'- cUCGUGCCcuucGCCC-CGCGUUCGcccgugauGUGCu -3'
miRNA:   3'- -GGUACGGc---CGGGuGUGCAAGCu-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 29381 0.67 0.471996
Target:  5'- gCAUGCCcucGGCCCAUGC---CG-GCGCg -3'
miRNA:   3'- gGUACGG---CCGGGUGUGcaaGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 21790 0.67 0.462019
Target:  5'- aUCAUcGCCGGCaucaaCACgACGUcCGcGGCGCu -3'
miRNA:   3'- -GGUA-CGGCCGg----GUG-UGCAaGC-UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 934 0.67 0.48208
Target:  5'- uCCGgcgGCgCGGgCCACGCGUccaCGGGCa- -3'
miRNA:   3'- -GGUa--CG-GCCgGGUGUGCAa--GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 5098 0.67 0.492268
Target:  5'- gCCGUGCCuucguuggcuucGGUCUGCGCcucggCGGGCGUg -3'
miRNA:   3'- -GGUACGG------------CCGGGUGUGcaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 4955 0.67 0.512932
Target:  5'- ---cGCCGGCCCucggcgacCAuCGUcgCGAGCGg -3'
miRNA:   3'- gguaCGGCCGGGu-------GU-GCAa-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 11305 0.67 0.462019
Target:  5'- gCAgcgGCCGGCUCgGCAg---CGAGCGCc -3'
miRNA:   3'- gGUa--CGGCCGGG-UGUgcaaGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.