miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 6999 0.66 0.576805
Target:  5'- aCCAgacgGCgCGGCCCAUGC---CGAGuUGCg -3'
miRNA:   3'- -GGUa---CG-GCCGGGUGUGcaaGCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 5098 0.67 0.492268
Target:  5'- gCCGUGCCuucguuggcuucGGUCUGCGCcucggCGGGCGUg -3'
miRNA:   3'- -GGUACGG------------CCGGGUGUGcaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 35400 0.67 0.481067
Target:  5'- cUCGUgGCCGGCCgccgcggCGCGCGgcagUgGAGCGa -3'
miRNA:   3'- -GGUA-CGGCCGG-------GUGUGCa---AgCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 520 0.81 0.062589
Target:  5'- cUCAUGCCcGCaCCACACGcgcagagggUUCGAGCGCa -3'
miRNA:   3'- -GGUACGGcCG-GGUGUGC---------AAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 25084 0.66 0.566003
Target:  5'- aCCGgcugGCCGGCggCCGC-CGgcgCGAGCu- -3'
miRNA:   3'- -GGUa---CGGCCG--GGUGuGCaa-GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 29986 0.66 0.566003
Target:  5'- aUCGUGCgcgaGGCCCgcgGCAUGUggGAGUGg -3'
miRNA:   3'- -GGUACGg---CCGGG---UGUGCAagCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 35633 0.66 0.555254
Target:  5'- gCCGUGugcCCGGCgcucgCCGCACaugUCGAGCa- -3'
miRNA:   3'- -GGUAC---GGCCG-----GGUGUGca-AGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 40455 0.66 0.555254
Target:  5'- gCCGUGCCGGgCauCACGauuuccUCGcGCGCg -3'
miRNA:   3'- -GGUACGGCCgGguGUGCa-----AGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 5726 0.66 0.533945
Target:  5'- gCCuucGCCGGUgCCGCAUGcuucgcUUCGAGCucGCg -3'
miRNA:   3'- -GGua-CGGCCG-GGUGUGC------AAGCUCG--CG- -5'
28161 5' -57.4 NC_005887.1 + 4955 0.67 0.512932
Target:  5'- ---cGCCGGCCCucggcgacCAuCGUcgCGAGCGg -3'
miRNA:   3'- gguaCGGCCGGGu-------GU-GCAa-GCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 11157 0.66 0.533945
Target:  5'- aCCA-GCCGauGCgCCACGCGgaaUCGuuugagcagcGGCGCg -3'
miRNA:   3'- -GGUaCGGC--CG-GGUGUGCa--AGC----------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 17253 0.66 0.544565
Target:  5'- aCAuUGCCGcGUgCGgcCGCGUUCGcGCGCu -3'
miRNA:   3'- gGU-ACGGC-CGgGU--GUGCAAGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 26497 0.66 0.576805
Target:  5'- ---cGCgCGGCUgcagCGCGCGUUCccGCGCg -3'
miRNA:   3'- gguaCG-GCCGG----GUGUGCAAGcuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 1916 0.66 0.523398
Target:  5'- aCCAgugGuCCGaGUCCgGCGCGUUCGuGuCGCc -3'
miRNA:   3'- -GGUa--C-GGC-CGGG-UGUGCAAGCuC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 38291 0.66 0.576805
Target:  5'- aCCAUcCCGGCCaCGCGCaaGgcUGcGCGCg -3'
miRNA:   3'- -GGUAcGGCCGG-GUGUG--CaaGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 11395 0.66 0.544565
Target:  5'- gCGUaCCGGCCguCGCGguugCG-GCGCu -3'
miRNA:   3'- gGUAcGGCCGGguGUGCaa--GCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 24811 0.66 0.523398
Target:  5'- aCGUcGCCGGCCCGaagcucgGUUCGcuggaaguGCGCa -3'
miRNA:   3'- gGUA-CGGCCGGGUgug----CAAGCu-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 934 0.67 0.48208
Target:  5'- uCCGgcgGCgCGGgCCACGCGUccaCGGGCa- -3'
miRNA:   3'- -GGUa--CG-GCCgGGUGUGCAa--GCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 17758 0.66 0.57356
Target:  5'- ---aGCCGGCCguCACGaacaUCGugccgacgucgccaAGCGCg -3'
miRNA:   3'- gguaCGGCCGGguGUGCa---AGC--------------UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 7955 0.66 0.555254
Target:  5'- aUCGUcGCCGGCCUGCucguCGgaCGAGuCGg -3'
miRNA:   3'- -GGUA-CGGCCGGGUGu---GCaaGCUC-GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.