miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28161 5' -57.4 NC_005887.1 + 42002 0.66 0.576805
Target:  5'- gCC-UG-CGGCCCACGuCGagugUCGccgcGGCGCg -3'
miRNA:   3'- -GGuACgGCCGGGUGU-GCa---AGC----UCGCG- -5'
28161 5' -57.4 NC_005887.1 + 41078 0.67 0.462019
Target:  5'- gCCAguagacGCCuGUCCACACGUaccaggcuUCGAGCu- -3'
miRNA:   3'- -GGUa-----CGGcCGGGUGUGCA--------AGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 40678 0.67 0.462019
Target:  5'- gCCgAUGUgCGGCCaCACACGcucgUCGAGgaacCGCg -3'
miRNA:   3'- -GG-UACG-GCCGG-GUGUGCa---AGCUC----GCG- -5'
28161 5' -57.4 NC_005887.1 + 40455 0.66 0.555254
Target:  5'- gCCGUGCCGGgCauCACGauuuccUCGcGCGCg -3'
miRNA:   3'- -GGUACGGCCgGguGUGCa-----AGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40321 0.66 0.576805
Target:  5'- aCAUGCCGaagacguucgccGCCgaaauggACugGccgUCGAGCGCg -3'
miRNA:   3'- gGUACGGC------------CGGg------UGugCa--AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40274 0.67 0.502554
Target:  5'- gCCGcugGCCGGCaagucggugCCGCucgauuCGUUCGAGCu- -3'
miRNA:   3'- -GGUa--CGGCCG---------GGUGu-----GCAAGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 40234 0.79 0.076292
Target:  5'- uUCGUGCCGucgcgcaGCUCACACGcggCGAGCGCg -3'
miRNA:   3'- -GGUACGGC-------CGGGUGUGCaa-GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 40050 0.67 0.471996
Target:  5'- gCAUGUCGGgCCACGgCGUcUCGcccuuGUGCg -3'
miRNA:   3'- gGUACGGCCgGGUGU-GCA-AGCu----CGCG- -5'
28161 5' -57.4 NC_005887.1 + 39956 0.71 0.282455
Target:  5'- gUAUGCUGGUCCACcauucACGUgaugcgCGAGgCGCu -3'
miRNA:   3'- gGUACGGCCGGGUG-----UGCAa-----GCUC-GCG- -5'
28161 5' -57.4 NC_005887.1 + 38291 0.66 0.576805
Target:  5'- aCCAUcCCGGCCaCGCGCaaGgcUGcGCGCg -3'
miRNA:   3'- -GGUAcGGCCGG-GUGUG--CaaGCuCGCG- -5'
28161 5' -57.4 NC_005887.1 + 38227 0.67 0.471996
Target:  5'- gCCuUGCgcgUGGCCgGgAUGgUCGAGCGCu -3'
miRNA:   3'- -GGuACG---GCCGGgUgUGCaAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 37980 0.7 0.317319
Target:  5'- gCC-UGCUGGggcauggaaaacgaCCCAC-CGcUUCGAGCGCu -3'
miRNA:   3'- -GGuACGGCC--------------GGGUGuGC-AAGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 37073 0.68 0.419504
Target:  5'- aCGUGUucgcguaCGGCCUGCGCGUgcucgccggcgagcUCGAcccGCGCg -3'
miRNA:   3'- gGUACG-------GCCGGGUGUGCA--------------AGCU---CGCG- -5'
28161 5' -57.4 NC_005887.1 + 36488 0.68 0.404642
Target:  5'- ---aGCCGG-CCGCGCGgaaggCGGuGCGCa -3'
miRNA:   3'- gguaCGGCCgGGUGUGCaa---GCU-CGCG- -5'
28161 5' -57.4 NC_005887.1 + 36400 0.7 0.319652
Target:  5'- ---cGUCGGCCUAUACcuggaUCGAGUGCg -3'
miRNA:   3'- gguaCGGCCGGGUGUGca---AGCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 35965 0.67 0.471996
Target:  5'- cUCGUGCCcuucGCCC-CGCGUUCGcccgugauGUGCu -3'
miRNA:   3'- -GGUACGGc---CGGGuGUGCAAGCu-------CGCG- -5'
28161 5' -57.4 NC_005887.1 + 35633 0.66 0.555254
Target:  5'- gCCGUGugcCCGGCgcucgCCGCACaugUCGAGCa- -3'
miRNA:   3'- -GGUAC---GGCCG-----GGUGUGca-AGCUCGcg -5'
28161 5' -57.4 NC_005887.1 + 35433 0.7 0.311928
Target:  5'- gCUGUGCaGGCCCGCGUGgugcCGGGCGUg -3'
miRNA:   3'- -GGUACGgCCGGGUGUGCaa--GCUCGCG- -5'
28161 5' -57.4 NC_005887.1 + 35400 0.67 0.481067
Target:  5'- cUCGUgGCCGGCCgccgcggCGCGCGgcagUgGAGCGa -3'
miRNA:   3'- -GGUA-CGGCCGG-------GUGUGCa---AgCUCGCg -5'
28161 5' -57.4 NC_005887.1 + 34940 0.68 0.432777
Target:  5'- gCCGUcGCCGGCUUcgaACucgGCGggCGuGCGCa -3'
miRNA:   3'- -GGUA-CGGCCGGG---UG---UGCaaGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.