miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 25093 0.66 0.507697
Target:  5'- uUCUGCGcUACCg-GCugGCCGGCg- -3'
miRNA:   3'- uGGACGUuGUGGagCGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 25196 0.67 0.466255
Target:  5'- gACCUGCAGCugCggCGCugGaucuCGGCc- -3'
miRNA:   3'- -UGGACGUUGugGa-GCGugCg---GCUGac -5'
28162 3' -57.3 NC_005887.1 + 26124 0.67 0.436353
Target:  5'- uCCUGCAcggcGCGCUUCGUuucgcgGCGCuCGACg- -3'
miRNA:   3'- uGGACGU----UGUGGAGCG------UGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 26163 0.67 0.456168
Target:  5'- uCCUGCucgacgccaugaAACGCCgCGCGgGCCG-CUGa -3'
miRNA:   3'- uGGACG------------UUGUGGaGCGUgCGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 26525 0.66 0.518304
Target:  5'- cGCCUGCAguuucaggucguGCACCUCGUGCcacggugcgguGUCG-CUGc -3'
miRNA:   3'- -UGGACGU------------UGUGGAGCGUG-----------CGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 26843 0.66 0.486767
Target:  5'- -aCUGCAcgAUCUCGCucgacccgGCCGACUGg -3'
miRNA:   3'- ugGACGUugUGGAGCGug------CGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 27089 0.68 0.371136
Target:  5'- cGCUUGCuGCGCUgguucgacaCGCGCGUCGACUu -3'
miRNA:   3'- -UGGACGuUGUGGa--------GCGUGCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 27245 0.72 0.21203
Target:  5'- ---cGCAACugCaUCGCGCGCCGGCc- -3'
miRNA:   3'- uggaCGUUGugG-AGCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 27856 0.68 0.417044
Target:  5'- cGCCUGCGucgGCGCCgucgucauggCGCucuaccuCGCCGGCg- -3'
miRNA:   3'- -UGGACGU---UGUGGa---------GCGu------GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28111 0.67 0.426634
Target:  5'- ---cGCAGCGCCugcUCGauCACGCCGACg- -3'
miRNA:   3'- uggaCGUUGUGG---AGC--GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28149 1.09 0.000439
Target:  5'- gACCUGCAACACCUCGCACGCCGACUGg -3'
miRNA:   3'- -UGGACGUUGUGGAGCGUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 28407 0.7 0.31289
Target:  5'- aGCCaaUGCcGCGCCggCGCagACGCCGACa- -3'
miRNA:   3'- -UGG--ACGuUGUGGa-GCG--UGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28489 0.75 0.140427
Target:  5'- cGCgaGCAcgaGCGCCUgCGCGCGCuCGGCUGc -3'
miRNA:   3'- -UGgaCGU---UGUGGA-GCGUGCG-GCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 29373 0.66 0.507697
Target:  5'- cGCgaGCGGCAugcCCUCGgccCAUGCCGGCg- -3'
miRNA:   3'- -UGgaCGUUGU---GGAGC---GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 29808 0.69 0.362377
Target:  5'- cGCCggGCAAgACCgUGCACGCgCGGCg- -3'
miRNA:   3'- -UGGa-CGUUgUGGaGCGUGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 29906 0.72 0.21778
Target:  5'- cGCCUGCGACAuCCUCaaACGCCu-CUGg -3'
miRNA:   3'- -UGGACGUUGU-GGAGcgUGCGGcuGAC- -5'
28162 3' -57.3 NC_005887.1 + 31733 0.72 0.229681
Target:  5'- uGCCUGCugcaAACGCUUCGCuGCGCCccGugUGa -3'
miRNA:   3'- -UGGACG----UUGUGGAGCG-UGCGG--CugAC- -5'
28162 3' -57.3 NC_005887.1 + 32270 0.67 0.436353
Target:  5'- gACgaGCGGCACCU--CugGCCGcACUGg -3'
miRNA:   3'- -UGgaCGUUGUGGAgcGugCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 32394 0.69 0.365863
Target:  5'- cGCCgGCAucggcgugugguccuACGCaCUgCgGCGCGCCGGCUGg -3'
miRNA:   3'- -UGGaCGU---------------UGUG-GA-G-CGUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 32743 0.67 0.426634
Target:  5'- ---cGCGGCGCUcgcgUGCGCGCCGGCg- -3'
miRNA:   3'- uggaCGUUGUGGa---GCGUGCGGCUGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.