miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 13116 0.66 0.497182
Target:  5'- gGCCUuguacGCGGCGa--CGCugGCCGugUGg -3'
miRNA:   3'- -UGGA-----CGUUGUggaGCGugCGGCugAC- -5'
28162 3' -57.3 NC_005887.1 + 13157 0.68 0.398266
Target:  5'- cCCUGCAGCACUcCGCgaucgaGCGCCG-Cg- -3'
miRNA:   3'- uGGACGUUGUGGaGCG------UGCGGCuGac -5'
28162 3' -57.3 NC_005887.1 + 13475 0.67 0.446199
Target:  5'- cGCa-GCAGCGgCUUGC-CGCCGACg- -3'
miRNA:   3'- -UGgaCGUUGUgGAGCGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14015 0.7 0.305157
Target:  5'- cGCCUccGCAAcCGCCggCGCGcCGCCGGCg- -3'
miRNA:   3'- -UGGA--CGUU-GUGGa-GCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14716 0.67 0.446199
Target:  5'- aACCggcgacggGCAGCACC----GCGCCGGCUGc -3'
miRNA:   3'- -UGGa-------CGUUGUGGagcgUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 15352 0.66 0.528998
Target:  5'- --aUGCGGCAgUCUCGUuCGCCGGCg- -3'
miRNA:   3'- uggACGUUGU-GGAGCGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 15793 0.67 0.472362
Target:  5'- uCCUGCAGCuggcgcgucagcuCCUU-CACGCCGGCg- -3'
miRNA:   3'- uGGACGUUGu------------GGAGcGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 15930 0.67 0.426634
Target:  5'- -gCUGguGCGCCUgcUGCGCGCgGGCg- -3'
miRNA:   3'- ugGACguUGUGGA--GCGUGCGgCUGac -5'
28162 3' -57.3 NC_005887.1 + 16561 0.68 0.417044
Target:  5'- gGCCUGCGACAUCgccgaccaGCcCGCCGGaucCUGc -3'
miRNA:   3'- -UGGACGUUGUGGag------CGuGCGGCU---GAC- -5'
28162 3' -57.3 NC_005887.1 + 17090 0.7 0.289399
Target:  5'- gACCgcucGCAAUACCUCGacgACGCCGggaauccGCUGa -3'
miRNA:   3'- -UGGa---CGUUGUGGAGCg--UGCGGC-------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 17239 0.67 0.455165
Target:  5'- gGCC-GCGuucgcgcgcucccACGCCUCGCGaucuuCGCCGACc- -3'
miRNA:   3'- -UGGaCGU-------------UGUGGAGCGU-----GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 18019 0.71 0.275698
Target:  5'- gACCgccGC-GCGCUUaCGCGCGCCgGACUGa -3'
miRNA:   3'- -UGGa--CGuUGUGGA-GCGUGCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 19255 0.67 0.426634
Target:  5'- cACCUGUAcCGCUUgGUGcCGCCGACg- -3'
miRNA:   3'- -UGGACGUuGUGGAgCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 21602 0.66 0.507697
Target:  5'- cGCCUGCAGCGucgugaauuucCCggcagccggCGUcguuGCGCCGAUUGc -3'
miRNA:   3'- -UGGACGUUGU-----------GGa--------GCG----UGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 21873 0.69 0.362377
Target:  5'- cGCCcgGCAGCGCCgCGgACGUCGugUu -3'
miRNA:   3'- -UGGa-CGUUGUGGaGCgUGCGGCugAc -5'
28162 3' -57.3 NC_005887.1 + 23323 0.72 0.235835
Target:  5'- cACgaGCuGCGCCUuuUGCGCGCCGACc- -3'
miRNA:   3'- -UGgaCGuUGUGGA--GCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 23374 0.68 0.398266
Target:  5'- cGCagaUGCuuuuGCugCUCGCGCuGCCG-CUGg -3'
miRNA:   3'- -UGg--ACGu---UGugGAGCGUG-CGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 23479 0.67 0.446199
Target:  5'- aGCCgGCGACGCCcuugaUCuGCuuGCCGACg- -3'
miRNA:   3'- -UGGaCGUUGUGG-----AG-CGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 23942 0.67 0.446199
Target:  5'- gGCCUcGCGGCGUCUgCGCACGCacCGACg- -3'
miRNA:   3'- -UGGA-CGUUGUGGA-GCGUGCG--GCUGac -5'
28162 3' -57.3 NC_005887.1 + 24438 0.75 0.144416
Target:  5'- gACCUGCAGCGCggCUCGUgguucguCGCCGACg- -3'
miRNA:   3'- -UGGACGUUGUG--GAGCGu------GCGGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.