miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 27245 0.72 0.21203
Target:  5'- ---cGCAACugCaUCGCGCGCCGGCc- -3'
miRNA:   3'- uggaCGUUGugG-AGCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 31733 0.72 0.229681
Target:  5'- uGCCUGCugcaAACGCUUCGCuGCGCCccGugUGa -3'
miRNA:   3'- -UGGACG----UUGUGGAGCG-UGCGG--CugAC- -5'
28162 3' -57.3 NC_005887.1 + 40671 0.71 0.241491
Target:  5'- gGCC-GCAccauccuGCACCUggcgCGCGCGCaCGGCUGg -3'
miRNA:   3'- -UGGaCGU-------UGUGGA----GCGUGCG-GCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 40933 0.71 0.242127
Target:  5'- cACCgaguucgGCAACGCCgagCGCAUGCuCGACc- -3'
miRNA:   3'- -UGGa------CGUUGUGGa--GCGUGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 36021 0.71 0.268698
Target:  5'- aACCaGCAGCgucACCUCG-GCGCCGGCg- -3'
miRNA:   3'- -UGGaCGUUG---UGGAGCgUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 12131 0.71 0.275698
Target:  5'- gACgaGCAGgcCGCCgUCGCGCGCCaGAUUGg -3'
miRNA:   3'- -UGgaCGUU--GUGG-AGCGUGCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 18019 0.71 0.275698
Target:  5'- gACCgccGC-GCGCUUaCGCGCGCCgGACUGa -3'
miRNA:   3'- -UGGa--CGuUGUGGA-GCGUGCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 27089 0.68 0.371136
Target:  5'- cGCUUGCuGCGCUgguucgacaCGCGCGUCGACUu -3'
miRNA:   3'- -UGGACGuUGUGGa--------GCGUGCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 2347 0.68 0.371136
Target:  5'- uCCggcggGCGACcaGCgCUCGCAgGCCGACg- -3'
miRNA:   3'- uGGa----CGUUG--UG-GAGCGUgCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 6841 0.69 0.327988
Target:  5'- gUCUGCAACaucgacgugucggACCUCGCgACGUCGGCc- -3'
miRNA:   3'- uGGACGUUG-------------UGGAGCG-UGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 6970 0.69 0.320769
Target:  5'- aACCUGCGugaaaagcuCGCCUCgGCAuCGUCGACa- -3'
miRNA:   3'- -UGGACGUu--------GUGGAG-CGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14015 0.7 0.305157
Target:  5'- cGCCUccGCAAcCGCCggCGCGcCGCCGGCg- -3'
miRNA:   3'- -UGGA--CGUU-GUGGa-GCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 33868 0.7 0.297573
Target:  5'- aGCCUGCGGCAgCCgacagCGCuccguCGCCGuAUUGg -3'
miRNA:   3'- -UGGACGUUGU-GGa----GCGu----GCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 17090 0.7 0.289399
Target:  5'- gACCgcucGCAAUACCUCGacgACGCCGggaauccGCUGa -3'
miRNA:   3'- -UGGa---CGUUGUGGAGCg--UGCGGC-------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 41604 0.66 0.490921
Target:  5'- cGCgUGCGcgccgaGCGCCUCGCGgaucuugccgagcacCGUCGACUu -3'
miRNA:   3'- -UGgACGU------UGUGGAGCGU---------------GCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 13116 0.66 0.497182
Target:  5'- gGCCUuguacGCGGCGa--CGCugGCCGugUGg -3'
miRNA:   3'- -UGGA-----CGUUGUggaGCGugCGGCugAC- -5'
28162 3' -57.3 NC_005887.1 + 25093 0.66 0.507697
Target:  5'- uUCUGCGcUACCg-GCugGCCGGCg- -3'
miRNA:   3'- uGGACGUuGUGGagCGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 21602 0.66 0.507697
Target:  5'- cGCCUGCAGCGucgugaauuucCCggcagccggCGUcguuGCGCCGAUUGc -3'
miRNA:   3'- -UGGACGUUGU-----------GGa--------GCG----UGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 35020 0.66 0.518304
Target:  5'- aACCUGCGcACGCC-CGCcgaguucgaaGCCGGCg- -3'
miRNA:   3'- -UGGACGU-UGUGGaGCGug--------CGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28489 0.75 0.140427
Target:  5'- cGCgaGCAcgaGCGCCUgCGCGCGCuCGGCUGc -3'
miRNA:   3'- -UGgaCGU---UGUGGA-GCGUGCG-GCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.