Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28162 | 3' | -57.3 | NC_005887.1 | + | 2416 | 0.7 | 0.31289 |
Target: 5'- gGCCUGCgAGCGCUggUCGCcCGCCGGa-- -3' miRNA: 3'- -UGGACG-UUGUGG--AGCGuGCGGCUgac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 4387 | 0.7 | 0.31289 |
Target: 5'- uCCUGCGGCAUgUCcggcaGCugGCCGGCc- -3' miRNA: 3'- uGGACGUUGUGgAG-----CGugCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 3949 | 0.7 | 0.31289 |
Target: 5'- uCCgGCAugGCgUCGUAUGCCgGGCUGc -3' miRNA: 3'- uGGaCGUugUGgAGCGUGCGG-CUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 6970 | 0.69 | 0.320769 |
Target: 5'- aACCUGCGugaaaagcuCGCCUCgGCAuCGUCGACa- -3' miRNA: 3'- -UGGACGUu--------GUGGAG-CGU-GCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 6943 | 0.69 | 0.320769 |
Target: 5'- uACUUGauCAGCGCCUgcgCGUugGCCGACg- -3' miRNA: 3'- -UGGAC--GUUGUGGA---GCGugCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 6841 | 0.69 | 0.327988 |
Target: 5'- gUCUGCAACaucgacgugucggACCUCGCgACGUCGGCc- -3' miRNA: 3'- uGGACGUUG-------------UGGAGCG-UGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 36102 | 0.69 | 0.336972 |
Target: 5'- gGCCUu--GCGCCUCGCcgGCGCCGAg-- -3' miRNA: 3'- -UGGAcguUGUGGAGCG--UGCGGCUgac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 21873 | 0.69 | 0.362377 |
Target: 5'- cGCCcgGCAGCGCCgCGgACGUCGugUu -3' miRNA: 3'- -UGGa-CGUUGUGGaGCgUGCGGCugAc -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 29808 | 0.69 | 0.362377 |
Target: 5'- cGCCggGCAAgACCgUGCACGCgCGGCg- -3' miRNA: 3'- -UGGa-CGUUgUGGaGCGUGCG-GCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 32394 | 0.69 | 0.365863 |
Target: 5'- cGCCgGCAucggcgugugguccuACGCaCUgCgGCGCGCCGGCUGg -3' miRNA: 3'- -UGGaCGU---------------UGUG-GA-G-CGUGCGGCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 27089 | 0.68 | 0.371136 |
Target: 5'- cGCUUGCuGCGCUgguucgacaCGCGCGUCGACUu -3' miRNA: 3'- -UGGACGuUGUGGa--------GCGUGCGGCUGAc -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 2347 | 0.68 | 0.371136 |
Target: 5'- uCCggcggGCGACcaGCgCUCGCAgGCCGACg- -3' miRNA: 3'- uGGa----CGUUG--UG-GAGCGUgCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 11466 | 0.68 | 0.380038 |
Target: 5'- uGCCUugGCGGCGCCggccgccaGCGCuCCGGCUGc -3' miRNA: 3'- -UGGA--CGUUGUGGag------CGUGcGGCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 2507 | 0.68 | 0.380038 |
Target: 5'- gGCCUGCucguGCACCcggacugcCGCACGCUGcgcaaggcGCUGu -3' miRNA: 3'- -UGGACGu---UGUGGa-------GCGUGCGGC--------UGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 23374 | 0.68 | 0.398266 |
Target: 5'- cGCagaUGCuuuuGCugCUCGCGCuGCCG-CUGg -3' miRNA: 3'- -UGg--ACGu---UGugGAGCGUG-CGGCuGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 4260 | 0.68 | 0.398266 |
Target: 5'- cGCgCUGCAGCACUUCGguCGCgGucaugucgccGCUGu -3' miRNA: 3'- -UG-GACGUUGUGGAGCguGCGgC----------UGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 13157 | 0.68 | 0.398266 |
Target: 5'- cCCUGCAGCACUcCGCgaucgaGCGCCG-Cg- -3' miRNA: 3'- uGGACGUUGUGGaGCG------UGCGGCuGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 3533 | 0.68 | 0.407587 |
Target: 5'- uGCCgaUGCAGCGCCUCugGUuCGCCGAg-- -3' miRNA: 3'- -UGG--ACGUUGUGGAG--CGuGCGGCUgac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 16561 | 0.68 | 0.417044 |
Target: 5'- gGCCUGCGACAUCgccgaccaGCcCGCCGGaucCUGc -3' miRNA: 3'- -UGGACGUUGUGGag------CGuGCGGCU---GAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 27856 | 0.68 | 0.417044 |
Target: 5'- cGCCUGCGucgGCGCCgucgucauggCGCucuaccuCGCCGGCg- -3' miRNA: 3'- -UGGACGU---UGUGGa---------GCGu------GCGGCUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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