Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28162 | 3' | -57.3 | NC_005887.1 | + | 28149 | 1.09 | 0.000439 |
Target: 5'- gACCUGCAACACCUCGCACGCCGACUGg -3' miRNA: 3'- -UGGACGUUGUGGAGCGUGCGGCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 248 | 0.77 | 0.09705 |
Target: 5'- gACCUGCGGCGCCUCGaccugAUGCCGAa-- -3' miRNA: 3'- -UGGACGUUGUGGAGCg----UGCGGCUgac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 28489 | 0.75 | 0.140427 |
Target: 5'- cGCgaGCAcgaGCGCCUgCGCGCGCuCGGCUGc -3' miRNA: 3'- -UGgaCGU---UGUGGA-GCGUGCG-GCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 24438 | 0.75 | 0.144416 |
Target: 5'- gACCUGCAGCGCggCUCGUgguucguCGCCGACg- -3' miRNA: 3'- -UGGACGUUGUG--GAGCGu------GCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 27245 | 0.72 | 0.21203 |
Target: 5'- ---cGCAACugCaUCGCGCGCCGGCc- -3' miRNA: 3'- uggaCGUUGugG-AGCGUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 29906 | 0.72 | 0.21778 |
Target: 5'- cGCCUGCGACAuCCUCaaACGCCu-CUGg -3' miRNA: 3'- -UGGACGUUGU-GGAGcgUGCGGcuGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 31733 | 0.72 | 0.229681 |
Target: 5'- uGCCUGCugcaAACGCUUCGCuGCGCCccGugUGa -3' miRNA: 3'- -UGGACG----UUGUGGAGCG-UGCGG--CugAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 23323 | 0.72 | 0.235835 |
Target: 5'- cACgaGCuGCGCCUuuUGCGCGCCGACc- -3' miRNA: 3'- -UGgaCGuUGUGGA--GCGUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 12645 | 0.72 | 0.235835 |
Target: 5'- gGCCgggucgGCgGACACCaugCGCAUGCCGGCg- -3' miRNA: 3'- -UGGa-----CG-UUGUGGa--GCGUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 40671 | 0.71 | 0.241491 |
Target: 5'- gGCC-GCAccauccuGCACCUggcgCGCGCGCaCGGCUGg -3' miRNA: 3'- -UGGaCGU-------UGUGGA----GCGUGCG-GCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 40933 | 0.71 | 0.242127 |
Target: 5'- cACCgaguucgGCAACGCCgagCGCAUGCuCGACc- -3' miRNA: 3'- -UGGa------CGUUGUGGa--GCGUGCG-GCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 32826 | 0.71 | 0.261842 |
Target: 5'- aGCCgGCuGCAUggCGCGCGCCGGCg- -3' miRNA: 3'- -UGGaCGuUGUGgaGCGUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 36021 | 0.71 | 0.268698 |
Target: 5'- aACCaGCAGCgucACCUCG-GCGCCGGCg- -3' miRNA: 3'- -UGGaCGUUG---UGGAGCgUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 18019 | 0.71 | 0.275698 |
Target: 5'- gACCgccGC-GCGCUUaCGCGCGCCgGACUGa -3' miRNA: 3'- -UGGa--CGuUGUGGA-GCGUGCGG-CUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 12131 | 0.71 | 0.275698 |
Target: 5'- gACgaGCAGgcCGCCgUCGCGCGCCaGAUUGg -3' miRNA: 3'- -UGgaCGUU--GUGG-AGCGUGCGG-CUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 41661 | 0.7 | 0.289399 |
Target: 5'- gGCC-GCcGCACCUgggccgcCGCugGCCGACa- -3' miRNA: 3'- -UGGaCGuUGUGGA-------GCGugCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 17090 | 0.7 | 0.289399 |
Target: 5'- gACCgcucGCAAUACCUCGacgACGCCGggaauccGCUGa -3' miRNA: 3'- -UGGa---CGUUGUGGAGCg--UGCGGC-------UGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 33868 | 0.7 | 0.297573 |
Target: 5'- aGCCUGCGGCAgCCgacagCGCuccguCGCCGuAUUGg -3' miRNA: 3'- -UGGACGUUGU-GGa----GCGu----GCGGC-UGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 14015 | 0.7 | 0.305157 |
Target: 5'- cGCCUccGCAAcCGCCggCGCGcCGCCGGCg- -3' miRNA: 3'- -UGGA--CGUU-GUGGa-GCGU-GCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 4387 | 0.7 | 0.31289 |
Target: 5'- uCCUGCGGCAUgUCcggcaGCugGCCGGCc- -3' miRNA: 3'- uGGACGUUGUGgAG-----CGugCGGCUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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