Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28162 | 3' | -57.3 | NC_005887.1 | + | 26843 | 0.66 | 0.486767 |
Target: 5'- -aCUGCAcgAUCUCGCucgacccgGCCGACUGg -3' miRNA: 3'- ugGACGUugUGGAGCGug------CGGCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 2427 | 0.66 | 0.528998 |
Target: 5'- aGCCcGCGccgacgaaugACACCUCGCugcgcuacgGCGCCGucgacgaggcGCUGa -3' miRNA: 3'- -UGGaCGU----------UGUGGAGCG---------UGCGGC----------UGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 7422 | 0.66 | 0.528998 |
Target: 5'- cACCcGCcgcCGCCUCGUuugGCGCUGGCg- -3' miRNA: 3'- -UGGaCGuu-GUGGAGCG---UGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 15352 | 0.66 | 0.528998 |
Target: 5'- --aUGCGGCAgUCUCGUuCGCCGGCg- -3' miRNA: 3'- uggACGUUGU-GGAGCGuGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 41604 | 0.66 | 0.490921 |
Target: 5'- cGCgUGCGcgccgaGCGCCUCGCGgaucuugccgagcacCGUCGACUu -3' miRNA: 3'- -UGgACGU------UGUGGAGCGU---------------GCGGCUGAc -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 35020 | 0.66 | 0.518304 |
Target: 5'- aACCUGCGcACGCC-CGCcgaguucgaaGCCGGCg- -3' miRNA: 3'- -UGGACGU-UGUGGaGCGug--------CGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 21602 | 0.66 | 0.507697 |
Target: 5'- cGCCUGCAGCGucgugaauuucCCggcagccggCGUcguuGCGCCGAUUGc -3' miRNA: 3'- -UGGACGUUGU-----------GGa--------GCG----UGCGGCUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 25093 | 0.66 | 0.507697 |
Target: 5'- uUCUGCGcUACCg-GCugGCCGGCg- -3' miRNA: 3'- uGGACGUuGUGGagCGugCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 13116 | 0.66 | 0.497182 |
Target: 5'- gGCCUuguacGCGGCGa--CGCugGCCGugUGg -3' miRNA: 3'- -UGGA-----CGUUGUggaGCGugCGGCugAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 26525 | 0.66 | 0.518304 |
Target: 5'- cGCCUGCAguuucaggucguGCACCUCGUGCcacggugcgguGUCG-CUGc -3' miRNA: 3'- -UGGACGU------------UGUGGAGCGUG-----------CGGCuGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 35380 | 0.66 | 0.507697 |
Target: 5'- gGCCUGCAGCAgCUCauGCucgauGCGCCcGCg- -3' miRNA: 3'- -UGGACGUUGUgGAG--CG-----UGCGGcUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 8567 | 0.66 | 0.486767 |
Target: 5'- uGCCgaagGCAGCACCgcagcagguuUCGUucgACGCUGGCg- -3' miRNA: 3'- -UGGa---CGUUGUGG----------AGCG---UGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 39471 | 0.66 | 0.497182 |
Target: 5'- uGCCUGaaaAGCGCgUguugcCGCugGCCaGGCUGa -3' miRNA: 3'- -UGGACg--UUGUGgA-----GCGugCGG-CUGAC- -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 29373 | 0.66 | 0.507697 |
Target: 5'- cGCgaGCGGCAugcCCUCGgccCAUGCCGGCg- -3' miRNA: 3'- -UGgaCGUUGU---GGAGC---GUGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 4622 | 0.67 | 0.466255 |
Target: 5'- cGCC-GCGGCGCCggugGC-CGCCGGCg- -3' miRNA: 3'- -UGGaCGUUGUGGag--CGuGCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 2946 | 0.67 | 0.476456 |
Target: 5'- cGCC-GCGGCACCgcCGCGaccauccuCGCCGGCg- -3' miRNA: 3'- -UGGaCGUUGUGGa-GCGU--------GCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 23942 | 0.67 | 0.446199 |
Target: 5'- gGCCUcGCGGCGUCUgCGCACGCacCGACg- -3' miRNA: 3'- -UGGA-CGUUGUGGA-GCGUGCG--GCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 23479 | 0.67 | 0.446199 |
Target: 5'- aGCCgGCGACGCCcuugaUCuGCuuGCCGACg- -3' miRNA: 3'- -UGGaCGUUGUGG-----AG-CGugCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 19255 | 0.67 | 0.426634 |
Target: 5'- cACCUGUAcCGCUUgGUGcCGCCGACg- -3' miRNA: 3'- -UGGACGUuGUGGAgCGU-GCGGCUGac -5' |
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28162 | 3' | -57.3 | NC_005887.1 | + | 32743 | 0.67 | 0.426634 |
Target: 5'- ---cGCGGCGCUcgcgUGCGCGCCGGCg- -3' miRNA: 3'- uggaCGUUGUGGa---GCGUGCGGCUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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