miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 32743 0.67 0.426634
Target:  5'- ---cGCGGCGCUcgcgUGCGCGCCGGCg- -3'
miRNA:   3'- uggaCGUUGUGGa---GCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 6970 0.69 0.320769
Target:  5'- aACCUGCGugaaaagcuCGCCUCgGCAuCGUCGACa- -3'
miRNA:   3'- -UGGACGUu--------GUGGAG-CGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 6841 0.69 0.327988
Target:  5'- gUCUGCAACaucgacgugucggACCUCGCgACGUCGGCc- -3'
miRNA:   3'- uGGACGUUG-------------UGGAGCG-UGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 2347 0.68 0.371136
Target:  5'- uCCggcggGCGACcaGCgCUCGCAgGCCGACg- -3'
miRNA:   3'- uGGa----CGUUG--UG-GAGCGUgCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 27089 0.68 0.371136
Target:  5'- cGCUUGCuGCGCUgguucgacaCGCGCGUCGACUu -3'
miRNA:   3'- -UGGACGuUGUGGa--------GCGUGCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 2507 0.68 0.380038
Target:  5'- gGCCUGCucguGCACCcggacugcCGCACGCUGcgcaaggcGCUGu -3'
miRNA:   3'- -UGGACGu---UGUGGa-------GCGUGCGGC--------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 23374 0.68 0.398266
Target:  5'- cGCagaUGCuuuuGCugCUCGCGCuGCCG-CUGg -3'
miRNA:   3'- -UGg--ACGu---UGugGAGCGUG-CGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 3533 0.68 0.407587
Target:  5'- uGCCgaUGCAGCGCCUCugGUuCGCCGAg-- -3'
miRNA:   3'- -UGG--ACGUUGUGGAG--CGuGCGGCUgac -5'
28162 3' -57.3 NC_005887.1 + 19255 0.67 0.426634
Target:  5'- cACCUGUAcCGCUUgGUGcCGCCGACg- -3'
miRNA:   3'- -UGGACGUuGUGGAgCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14015 0.7 0.305157
Target:  5'- cGCCUccGCAAcCGCCggCGCGcCGCCGGCg- -3'
miRNA:   3'- -UGGA--CGUU-GUGGa-GCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 33868 0.7 0.297573
Target:  5'- aGCCUGCGGCAgCCgacagCGCuccguCGCCGuAUUGg -3'
miRNA:   3'- -UGGACGUUGU-GGa----GCGu----GCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 17090 0.7 0.289399
Target:  5'- gACCgcucGCAAUACCUCGacgACGCCGggaauccGCUGa -3'
miRNA:   3'- -UGGa---CGUUGUGGAGCg--UGCGGC-------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 248 0.77 0.09705
Target:  5'- gACCUGCGGCGCCUCGaccugAUGCCGAa-- -3'
miRNA:   3'- -UGGACGUUGUGGAGCg----UGCGGCUgac -5'
28162 3' -57.3 NC_005887.1 + 27245 0.72 0.21203
Target:  5'- ---cGCAACugCaUCGCGCGCCGGCc- -3'
miRNA:   3'- uggaCGUUGugG-AGCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 31733 0.72 0.229681
Target:  5'- uGCCUGCugcaAACGCUUCGCuGCGCCccGugUGa -3'
miRNA:   3'- -UGGACG----UUGUGGAGCG-UGCGG--CugAC- -5'
28162 3' -57.3 NC_005887.1 + 40671 0.71 0.241491
Target:  5'- gGCC-GCAccauccuGCACCUggcgCGCGCGCaCGGCUGg -3'
miRNA:   3'- -UGGaCGU-------UGUGGA----GCGUGCG-GCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 40933 0.71 0.242127
Target:  5'- cACCgaguucgGCAACGCCgagCGCAUGCuCGACc- -3'
miRNA:   3'- -UGGa------CGUUGUGGa--GCGUGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 36021 0.71 0.268698
Target:  5'- aACCaGCAGCgucACCUCG-GCGCCGGCg- -3'
miRNA:   3'- -UGGaCGUUG---UGGAGCgUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 12131 0.71 0.275698
Target:  5'- gACgaGCAGgcCGCCgUCGCGCGCCaGAUUGg -3'
miRNA:   3'- -UGgaCGUU--GUGG-AGCGUGCGG-CUGAC- -5'
28162 3' -57.3 NC_005887.1 + 18019 0.71 0.275698
Target:  5'- gACCgccGC-GCGCUUaCGCGCGCCgGACUGa -3'
miRNA:   3'- -UGGa--CGuUGUGGA-GCGUGCGG-CUGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.