miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 15352 0.66 0.528998
Target:  5'- --aUGCGGCAgUCUCGUuCGCCGGCg- -3'
miRNA:   3'- uggACGUUGU-GGAGCGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 16561 0.68 0.417044
Target:  5'- gGCCUGCGACAUCgccgaccaGCcCGCCGGaucCUGc -3'
miRNA:   3'- -UGGACGUUGUGGag------CGuGCGGCU---GAC- -5'
28162 3' -57.3 NC_005887.1 + 13157 0.68 0.398266
Target:  5'- cCCUGCAGCACUcCGCgaucgaGCGCCG-Cg- -3'
miRNA:   3'- uGGACGUUGUGGaGCG------UGCGGCuGac -5'
28162 3' -57.3 NC_005887.1 + 28489 0.75 0.140427
Target:  5'- cGCgaGCAcgaGCGCCUgCGCGCGCuCGGCUGc -3'
miRNA:   3'- -UGgaCGU---UGUGGA-GCGUGCG-GCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 13116 0.66 0.497182
Target:  5'- gGCCUuguacGCGGCGa--CGCugGCCGugUGg -3'
miRNA:   3'- -UGGA-----CGUUGUggaGCGugCGGCugAC- -5'
28162 3' -57.3 NC_005887.1 + 41604 0.66 0.490921
Target:  5'- cGCgUGCGcgccgaGCGCCUCGCGgaucuugccgagcacCGUCGACUu -3'
miRNA:   3'- -UGgACGU------UGUGGAGCGU---------------GCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 5472 0.67 0.475431
Target:  5'- -gCUGCGGCGCCgccCGCcgguucaccggucGCGCUGGCUu -3'
miRNA:   3'- ugGACGUUGUGGa--GCG-------------UGCGGCUGAc -5'
28162 3' -57.3 NC_005887.1 + 15793 0.67 0.472362
Target:  5'- uCCUGCAGCuggcgcgucagcuCCUU-CACGCCGGCg- -3'
miRNA:   3'- uGGACGUUGu------------GGAGcGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 17239 0.67 0.455165
Target:  5'- gGCC-GCGuucgcgcgcucccACGCCUCGCGaucuuCGCCGACc- -3'
miRNA:   3'- -UGGaCGU-------------UGUGGAGCGU-----GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28111 0.67 0.426634
Target:  5'- ---cGCAGCGCCugcUCGauCACGCCGACg- -3'
miRNA:   3'- uggaCGUUGUGG---AGC--GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14716 0.67 0.446199
Target:  5'- aACCggcgacggGCAGCACC----GCGCCGGCUGc -3'
miRNA:   3'- -UGGa-------CGUUGUGGagcgUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 26163 0.67 0.456168
Target:  5'- uCCUGCucgacgccaugaAACGCCgCGCGgGCCG-CUGa -3'
miRNA:   3'- uGGACG------------UUGUGGaGCGUgCGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 35020 0.66 0.518304
Target:  5'- aACCUGCGcACGCC-CGCcgaguucgaaGCCGGCg- -3'
miRNA:   3'- -UGGACGU-UGUGGaGCGug--------CGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 32270 0.67 0.436353
Target:  5'- gACgaGCGGCACCU--CugGCCGcACUGg -3'
miRNA:   3'- -UGgaCGUUGUGGAgcGugCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 21602 0.66 0.507697
Target:  5'- cGCCUGCAGCGucgugaauuucCCggcagccggCGUcguuGCGCCGAUUGc -3'
miRNA:   3'- -UGGACGUUGU-----------GGa--------GCG----UGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 25196 0.67 0.466255
Target:  5'- gACCUGCAGCugCggCGCugGaucuCGGCc- -3'
miRNA:   3'- -UGGACGUUGugGa-GCGugCg---GCUGac -5'
28162 3' -57.3 NC_005887.1 + 15930 0.67 0.426634
Target:  5'- -gCUGguGCGCCUgcUGCGCGCgGGCg- -3'
miRNA:   3'- ugGACguUGUGGA--GCGUGCGgCUGac -5'
28162 3' -57.3 NC_005887.1 + 27856 0.68 0.417044
Target:  5'- cGCCUGCGucgGCGCCgucgucauggCGCucuaccuCGCCGGCg- -3'
miRNA:   3'- -UGGACGU---UGUGGa---------GCGu------GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 25093 0.66 0.507697
Target:  5'- uUCUGCGcUACCg-GCugGCCGGCg- -3'
miRNA:   3'- uGGACGUuGUGGagCGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 26843 0.66 0.486767
Target:  5'- -aCUGCAcgAUCUCGCucgacccgGCCGACUGg -3'
miRNA:   3'- ugGACGUugUGGAGCGug------CGGCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.