miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 3' -57.3 NC_005887.1 + 36057 0.67 0.456168
Target:  5'- gGCCU-CGACGCgCUCGCgcACGCCGuCg- -3'
miRNA:   3'- -UGGAcGUUGUG-GAGCG--UGCGGCuGac -5'
28162 3' -57.3 NC_005887.1 + 17239 0.67 0.455165
Target:  5'- gGCC-GCGuucgcgcgcucccACGCCUCGCGaucuuCGCCGACc- -3'
miRNA:   3'- -UGGaCGU-------------UGUGGAGCGU-----GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 23942 0.67 0.446199
Target:  5'- gGCCUcGCGGCGUCUgCGCACGCacCGACg- -3'
miRNA:   3'- -UGGA-CGUUGUGGA-GCGUGCG--GCUGac -5'
28162 3' -57.3 NC_005887.1 + 23479 0.67 0.446199
Target:  5'- aGCCgGCGACGCCcuugaUCuGCuuGCCGACg- -3'
miRNA:   3'- -UGGaCGUUGUGG-----AG-CGugCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 14716 0.67 0.446199
Target:  5'- aACCggcgacggGCAGCACC----GCGCCGGCUGc -3'
miRNA:   3'- -UGGa-------CGUUGUGGagcgUGCGGCUGAC- -5'
28162 3' -57.3 NC_005887.1 + 13475 0.67 0.446199
Target:  5'- cGCa-GCAGCGgCUUGC-CGCCGACg- -3'
miRNA:   3'- -UGgaCGUUGUgGAGCGuGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 26124 0.67 0.436353
Target:  5'- uCCUGCAcggcGCGCUUCGUuucgcgGCGCuCGACg- -3'
miRNA:   3'- uGGACGU----UGUGGAGCG------UGCG-GCUGac -5'
28162 3' -57.3 NC_005887.1 + 32270 0.67 0.436353
Target:  5'- gACgaGCGGCACCU--CugGCCGcACUGg -3'
miRNA:   3'- -UGgaCGUUGUGGAgcGugCGGC-UGAC- -5'
28162 3' -57.3 NC_005887.1 + 32743 0.67 0.426634
Target:  5'- ---cGCGGCGCUcgcgUGCGCGCCGGCg- -3'
miRNA:   3'- uggaCGUUGUGGa---GCGUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 28111 0.67 0.426634
Target:  5'- ---cGCAGCGCCugcUCGauCACGCCGACg- -3'
miRNA:   3'- uggaCGUUGUGG---AGC--GUGCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 15930 0.67 0.426634
Target:  5'- -gCUGguGCGCCUgcUGCGCGCgGGCg- -3'
miRNA:   3'- ugGACguUGUGGA--GCGUGCGgCUGac -5'
28162 3' -57.3 NC_005887.1 + 19255 0.67 0.426634
Target:  5'- cACCUGUAcCGCUUgGUGcCGCCGACg- -3'
miRNA:   3'- -UGGACGUuGUGGAgCGU-GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 16561 0.68 0.417044
Target:  5'- gGCCUGCGACAUCgccgaccaGCcCGCCGGaucCUGc -3'
miRNA:   3'- -UGGACGUUGUGGag------CGuGCGGCU---GAC- -5'
28162 3' -57.3 NC_005887.1 + 27856 0.68 0.417044
Target:  5'- cGCCUGCGucgGCGCCgucgucauggCGCucuaccuCGCCGGCg- -3'
miRNA:   3'- -UGGACGU---UGUGGa---------GCGu------GCGGCUGac -5'
28162 3' -57.3 NC_005887.1 + 3533 0.68 0.407587
Target:  5'- uGCCgaUGCAGCGCCUCugGUuCGCCGAg-- -3'
miRNA:   3'- -UGG--ACGUUGUGGAG--CGuGCGGCUgac -5'
28162 3' -57.3 NC_005887.1 + 4260 0.68 0.398266
Target:  5'- cGCgCUGCAGCACUUCGguCGCgGucaugucgccGCUGu -3'
miRNA:   3'- -UG-GACGUUGUGGAGCguGCGgC----------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 13157 0.68 0.398266
Target:  5'- cCCUGCAGCACUcCGCgaucgaGCGCCG-Cg- -3'
miRNA:   3'- uGGACGUUGUGGaGCG------UGCGGCuGac -5'
28162 3' -57.3 NC_005887.1 + 23374 0.68 0.398266
Target:  5'- cGCagaUGCuuuuGCugCUCGCGCuGCCG-CUGg -3'
miRNA:   3'- -UGg--ACGu---UGugGAGCGUG-CGGCuGAC- -5'
28162 3' -57.3 NC_005887.1 + 2507 0.68 0.380038
Target:  5'- gGCCUGCucguGCACCcggacugcCGCACGCUGcgcaaggcGCUGu -3'
miRNA:   3'- -UGGACGu---UGUGGa-------GCGUGCGGC--------UGAC- -5'
28162 3' -57.3 NC_005887.1 + 11466 0.68 0.380038
Target:  5'- uGCCUugGCGGCGCCggccgccaGCGCuCCGGCUGc -3'
miRNA:   3'- -UGGA--CGUUGUGGag------CGUGcGGCUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.