miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28162 5' -57.3 NC_005887.1 + 28185 1.1 0.000318
Target:  5'- cAACAUCGGGCUGUGCGCCGCAUCAGCg -3'
miRNA:   3'- -UUGUAGCCCGACACGCGGCGUAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 534 0.66 0.504059
Target:  5'- cGCGUCGGccGCcGcGCGCCGCGccggauaCAGCg -3'
miRNA:   3'- uUGUAGCC--CGaCaCGCGGCGUa------GUCG- -5'
28162 5' -57.3 NC_005887.1 + 13617 0.66 0.493482
Target:  5'- uGGCAgcgCGGcGCgcgGCgGCCGCAcUCAGCc -3'
miRNA:   3'- -UUGUa--GCC-CGacaCG-CGGCGU-AGUCG- -5'
28162 5' -57.3 NC_005887.1 + 28385 0.66 0.481965
Target:  5'- cGGCuUCGcGGCUGUcgaucacGCGCaCGUcgCAGCc -3'
miRNA:   3'- -UUGuAGC-CCGACA-------CGCG-GCGuaGUCG- -5'
28162 5' -57.3 NC_005887.1 + 37374 0.67 0.456292
Target:  5'- cAGCGUCGGcuuccuucuccuucaGCUG-GCGCUGCG-CGGUc -3'
miRNA:   3'- -UUGUAGCC---------------CGACaCGCGGCGUaGUCG- -5'
28162 5' -57.3 NC_005887.1 + 34917 0.67 0.441246
Target:  5'- gAACGUCGcGCUGUGCggaacuuGCCGuCGcCGGCu -3'
miRNA:   3'- -UUGUAGCcCGACACG-------CGGC-GUaGUCG- -5'
28162 5' -57.3 NC_005887.1 + 17966 0.67 0.432355
Target:  5'- uGCG-CGGGCU---CGCCGgCAUCGGCc -3'
miRNA:   3'- uUGUaGCCCGAcacGCGGC-GUAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 17790 0.67 0.422599
Target:  5'- --gGUCGuGGCUGU-CGUCGCAggGGCu -3'
miRNA:   3'- uugUAGC-CCGACAcGCGGCGUagUCG- -5'
28162 5' -57.3 NC_005887.1 + 1232 0.67 0.412977
Target:  5'- ----gCGGGCgcUGCGCgGCGcUCAGCa -3'
miRNA:   3'- uuguaGCCCGacACGCGgCGU-AGUCG- -5'
28162 5' -57.3 NC_005887.1 + 38645 0.68 0.384939
Target:  5'- cAACAUCGGGCcGUcguucuCGUCG-AUCAGCa -3'
miRNA:   3'- -UUGUAGCCCGaCAc-----GCGGCgUAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 32299 0.69 0.324595
Target:  5'- -uCGUCGGGCcagccgGcGCGCCGCAgu-GCg -3'
miRNA:   3'- uuGUAGCCCGa-----CaCGCGGCGUaguCG- -5'
28162 5' -57.3 NC_005887.1 + 17280 0.81 0.047102
Target:  5'- aGACGUCGGGCg--GCGCCGCGcgcgcaaacgccgguUCGGCg -3'
miRNA:   3'- -UUGUAGCCCGacaCGCGGCGU---------------AGUCG- -5'
28162 5' -57.3 NC_005887.1 + 9224 0.73 0.167085
Target:  5'- gAAgAUCGGuccuaGCgaacUGCGCCGCGUCGGCg -3'
miRNA:   3'- -UUgUAGCC-----CGac--ACGCGGCGUAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 5408 0.71 0.238132
Target:  5'- gAACcggCGGGCg--GCGCCGCAgcgacCGGCg -3'
miRNA:   3'- -UUGua-GCCCGacaCGCGGCGUa----GUCG- -5'
28162 5' -57.3 NC_005887.1 + 11103 0.71 0.242598
Target:  5'- cGCAUCGGcuggugcgcgcgaaGCUGgccgagGCGCCGUggCGGCg -3'
miRNA:   3'- uUGUAGCC--------------CGACa-----CGCGGCGuaGUCG- -5'
28162 5' -57.3 NC_005887.1 + 35817 0.71 0.257766
Target:  5'- ----aCGcGCUguguuccucGUGCGCCGCGUCGGCg -3'
miRNA:   3'- uuguaGCcCGA---------CACGCGGCGUAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 41435 0.7 0.264599
Target:  5'- cAGCGccucgUGGGCUaUGCGCUGC-UCGGCa -3'
miRNA:   3'- -UUGUa----GCCCGAcACGCGGCGuAGUCG- -5'
28162 5' -57.3 NC_005887.1 + 14200 0.7 0.281597
Target:  5'- --uGUCGGGCgcggccucggacagGgcgGCGCCGCGcuguUCGGCg -3'
miRNA:   3'- uugUAGCCCGa-------------Ca--CGCGGCGU----AGUCG- -5'
28162 5' -57.3 NC_005887.1 + 1310 0.7 0.285979
Target:  5'- cGACGuuuUCGcGuGCUGaGCGCCGCG-CAGCg -3'
miRNA:   3'- -UUGU---AGC-C-CGACaCGCGGCGUaGUCG- -5'
28162 5' -57.3 NC_005887.1 + 4329 0.66 0.490328
Target:  5'- -uCAUCGGGCcgagcaguucagacUgcGUGCgGCCgaGCGUCGGCg -3'
miRNA:   3'- uuGUAGCCCG--------------A--CACG-CGG--CGUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.