Results 21 - 40 of 149 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28163 | 5' | -55.4 | NC_005887.1 | + | 4348 | 0.66 | 0.620242 |
Target: 5'- aUGUCGaccuCGCGCGCGaucaUCG-GGCCg -3' miRNA: 3'- gACAGCgauuGCGCGUGC----AGCgUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 11521 | 0.66 | 0.620242 |
Target: 5'- uUGuUCGCgagcuGCGCGUugcgauccAUGaUCGCGGCCu -3' miRNA: 3'- gAC-AGCGau---UGCGCG--------UGC-AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 26694 | 0.66 | 0.664871 |
Target: 5'- aUGUCGCgauACa-GC-CGUCGCgcGGCCg -3' miRNA: 3'- gACAGCGau-UGcgCGuGCAGCG--UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 18642 | 0.66 | 0.664871 |
Target: 5'- aCUGgaaCGCcgcGACGaGCAUGUCGCccgcgaAGCCg -3' miRNA: 3'- -GACa--GCGa--UUGCgCGUGCAGCG------UCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 11367 | 0.66 | 0.653733 |
Target: 5'- cCUGaUC---AGCGCGgGCGUCagcGCAGCCg -3' miRNA: 3'- -GAC-AGcgaUUGCGCgUGCAG---CGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 30828 | 0.66 | 0.653733 |
Target: 5'- --cUCGCc-GCGCGCACGgUCG-AGCUg -3' miRNA: 3'- gacAGCGauUGCGCGUGC-AGCgUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41275 | 0.66 | 0.653733 |
Target: 5'- -gGUCacggGCacgacGACGCGCGgGUCggauGCAGCCa -3' miRNA: 3'- gaCAG----CGa----UUGCGCGUgCAG----CGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 42086 | 0.66 | 0.653733 |
Target: 5'- gCUGUCGCguggGGCGCG-AUGcCGC-GUCg -3' miRNA: 3'- -GACAGCGa---UUGCGCgUGCaGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 41278 | 0.66 | 0.664871 |
Target: 5'- -cGUCGacc-UGCGCACGggcgCGCugcuGCCg -3' miRNA: 3'- gaCAGCgauuGCGCGUGCa---GCGu---CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 6461 | 0.66 | 0.653733 |
Target: 5'- uUGUCGaCUucCGCGUACGcuucgaGCAuGCCg -3' miRNA: 3'- gACAGC-GAuuGCGCGUGCag----CGU-CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 40227 | 0.66 | 0.642576 |
Target: 5'- -cGUCGCgcagcucacACGCggcgaGCGCGgcgCGCAGCg -3' miRNA: 3'- gaCAGCGau-------UGCG-----CGUGCa--GCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 38790 | 0.66 | 0.609086 |
Target: 5'- cCUGaUCGCgagGCGCaGCAC--CGUAGCCu -3' miRNA: 3'- -GAC-AGCGau-UGCG-CGUGcaGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 10013 | 0.66 | 0.620242 |
Target: 5'- -aGUCGUauuUGAaauCGCGCAgcUUGCGGCCg -3' miRNA: 3'- gaCAGCG---AUU---GCGCGUgcAGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 14495 | 0.66 | 0.631409 |
Target: 5'- --aUCGCgguUGCGCGCGUCGgGuCCg -3' miRNA: 3'- gacAGCGauuGCGCGUGCAGCgUcGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 704 | 0.66 | 0.642576 |
Target: 5'- -cGUgCGCUcgcCGCGCGCuuucaUCGCGGCUu -3' miRNA: 3'- gaCA-GCGAuu-GCGCGUGc----AGCGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 27110 | 0.66 | 0.653733 |
Target: 5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3' miRNA: 3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 2966 | 0.66 | 0.609086 |
Target: 5'- -cGUCGUUcgcggcggccGACGUGUcCGUCGUcGCCu -3' miRNA: 3'- gaCAGCGA----------UUGCGCGuGCAGCGuCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 9062 | 0.66 | 0.642576 |
Target: 5'- -cGUCGU---CGCGCuuGUgCGCAGCa -3' miRNA: 3'- gaCAGCGauuGCGCGugCA-GCGUCGg -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 36069 | 0.66 | 0.647041 |
Target: 5'- --cUCGCgcACGCcgucgauguacagcuGCACGUagGCGGCCa -3' miRNA: 3'- gacAGCGauUGCG---------------CGUGCAg-CGUCGG- -5' |
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28163 | 5' | -55.4 | NC_005887.1 | + | 8321 | 0.67 | 0.569161 |
Target: 5'- aUGgacgCGCUGuuucgcgaggcauucGCGUGC-CGUCugGCGGCCg -3' miRNA: 3'- gACa---GCGAU---------------UGCGCGuGCAG--CGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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